chr20 : 23,756,639 23,757,182
543 bp 118 TFs 2 linked genes
This 543 bp open chromatin element is linked to CST1 and CST3 and is bound by 118 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CST1 5.7 kb Proximal Proximity
CST3 119.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:23,751,639 – 23,762,182
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 224 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 138 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 264 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_72h DE_72h-ARNTHIF1A_MA0259.2 5 bp overlap
BCL11A 1 dataset
Motif DE_72h DE_72h-BCL11A_MA2324.1 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 158 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DMRTA2 2 datasets
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DUX4 2 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 313 bp overlap
EPAS1 2 datasets
Motif DE_48h DE_48h-EPAS1_MA2325.1 9 bp overlap
Motif DE_72h DE_72h-EPAS1_MA2325.1 9 bp overlap
ETV2::FIGLA 4 datasets
Motif DE_48h DE_48h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_60h DE_60h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_72h DE_72h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_72h DE_72h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 4 datasets
Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 4 datasets
ChIP HepG2 ENCFF207NVJ 238 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 170 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 110 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 222 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 155 bp overlap
ChIP DE DE-FOXA2-1 543 bp overlap
ChIP DE DE-FOXA2-2 543 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 190 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXE1 3 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXG1 2 datasets
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXH1 3 datasets
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXN3 2 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA1 2 datasets
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 2 datasets
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 543 bp overlap
ChIP DE DE-GATA4-2 543 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 265 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 265 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 132 bp overlap
ChIP DE DE-GATA6-1 538 bp overlap
ChIP DE DE-GATA6-2 543 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 461 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 543 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 531 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 494 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 264 bp overlap
ChIP foregut GSE117136.GATA6.foregut 330 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HIF1A 2 datasets
Motif DE_48h DE_48h-HIF1A_MA1106.2 6 bp overlap
Motif DE_72h DE_72h-HIF1A_MA1106.2 6 bp overlap
HNF1A 2 datasets
Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HNF1B 3 datasets
Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 164 bp overlap
HOXC13 2 datasets
Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
IKZF1 3 datasets
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IKZF2 3 datasets
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 338 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 543 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 411 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 347 bp overlap
KLF17 1 dataset
Motif DE_72h DE_72h-KLF17_MA1514.2 14 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 267 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA1640.2 9 bp overlap
MYB 1 dataset
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
MYBL2 3 datasets
Motif DE_48h DE_48h-MYBL2_MA0777.1 15 bp overlap
Motif DE_60h DE_60h-MYBL2_MA0777.1 15 bp overlap
Motif DE_72h DE_72h-MYBL2_MA0777.1 15 bp overlap
MYF6 3 datasets
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
Msgn1 2 datasets
Motif DE_48h DE_48h-Msgn1_MA1524.3 10 bp overlap
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 314 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 220 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 262 bp overlap
ChIP hESC GSE20650.NANOG.hESC 158 bp overlap
ChIP hESC GSE18292.NANOG.hESC 167 bp overlap
NEUROG2 1 dataset
Motif DE_72h DE_72h-NEUROG2_MA0669.1 10 bp overlap
NR4A1 2 datasets
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
Motif DE_72h DE_72h-NR4A1_MA1112.3 8 bp overlap
Nr2e1 2 datasets
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_72h DE_72h-Nr2e1_MA0676.1 9 bp overlap
Nr5A2 3 datasets
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
OVOL1 3 datasets
Motif DE_48h DE_48h-OVOL1_MA1544.2 10 bp overlap
Motif DE_60h DE_60h-OVOL1_MA1544.2 10 bp overlap
Motif DE_72h DE_72h-OVOL1_MA1544.2 10 bp overlap
PBX2 1 dataset
Motif DE_72h DE_72h-PBX2_MA1113.3 9 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 260 bp overlap
ChIP H1 ENCFF833NJP 200 bp overlap
ChIP prostate gland ENCFF881OMH 58 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_72h DE_72h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 341 bp overlap
ChIP GM23338 ENCFF333SNB 300 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 418 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 478 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 2 datasets
Motif DE_72h DE_72h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
RXRA::VDR 3 datasets
Motif DE_48h DE_48h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap
Rhox11 2 datasets
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 467 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 320 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 483 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 503 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 432 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 539 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 288 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 287 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 419 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 422 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
SOX21 3 datasets
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SOX4 2 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 297 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap
SPIB 2 datasets
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SPIC 2 datasets
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Spi1 2 datasets
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Spz1 2 datasets
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 246 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF281 2 datasets
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF282 2 datasets
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF549 2 datasets
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZNF680 1 dataset
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
Zic2 1 dataset
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap