chr20 : 2,798,928 – 2,799,196
268 bp 59 TFs 1 linked gene
This 268 bp open chromatin element is linked to CPXM1 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CPXM1 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:2,793,928 – 2,804,196
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 56 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 197 bp overlap
BRD4 4 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 78 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 190 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 268 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 268 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 202 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 229 bp overlap
Cebpa 7 datasets
ChIP BLaER1 ENCFF031ISE 206 bp overlap
ChIP BLaER1 ENCFF093OYK 231 bp overlap
ChIP BLaER1 ENCFF274GAT 150 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ChIP BLaER1 ENCFF364PUR 246 bp overlap
ChIP BLaER1 ENCFF844FIP 268 bp overlap
ChIP BLaER1 ENCFF858JKM 265 bp overlap
EBF1 2 datasets
ChIP LCL GSE75503.EBF1.LCL 59 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 124 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 178 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 268 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 218 bp overlap
ESR1 9 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 252 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 268 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 257 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 164 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 268 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 203 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 224 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 268 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 268 bp overlap
EZH2 2 datasets
ChIP SU-DHL-6_DMSO GSE134136.EZH2.SU-DHL-6_DMSO 171 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 143 bp overlap
FLI1 2 datasets
ChIP NB4 GSE23730.FLI1.NB4 124 bp overlap
ChIP SEM GSE117864.FLI1.SEM 105 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 268 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 268 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 268 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 193 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 254 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 191 bp overlap
HIF1A 1 dataset
ChIP PC-3_siOC2 GSE106305.HIF1A.PC-3_siOC2 132 bp overlap
HNF4A 2 datasets
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 240 bp overlap
ChIP HCT-116_TCF4_DOX GSE62890.HNF4A.HCT-116_TCF4_DOX 198 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 173 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 54 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 84 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 268 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 268 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 268 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 268 bp overlap
MAX 8 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 213 bp overlap
ChIP NB4 ENCFF966MWB 168 bp overlap
ChIP NB4 ENCSR000EHS.MAX.NB4 121 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 268 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 104 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 101 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 163 bp overlap
ChIP WTC11 ENCFF223QFY 75 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 138 bp overlap
MYB 2 datasets
ChIP Loucy GSE94000.MYB.Loucy 232 bp overlap
ChIP SEM GSE117864.MYB.SEM 225 bp overlap
MYC 1 dataset
ChIP NB4 ENCFF142PRP 151 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 176 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 148 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 96 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 64 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 207 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 197 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 158 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 234 bp overlap
POLR2A 1 dataset
ChIP NB4 ENCFF780KAX 268 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 117 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 268 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 210 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 218 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 268 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 260 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 268 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 157 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 268 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 84 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 138 bp overlap
SRF 1 dataset
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 148 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 268 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 192 bp overlap
TCF7L2 17 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 268 bp overlap
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 209 bp overlap
ChIP HCT-116_C18 GSE127960.TCF7L2.HCT-116_C18 244 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 181 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 268 bp overlap
ChIP HCT116 ENCFF038POZ 248 bp overlap
ChIP HEK293 ENCFF513JQN 268 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 268 bp overlap
ChIP HeLa-S3 ENCFF673QAB 268 bp overlap
ChIP HeLa-S3 ENCFF673QAB 228 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 268 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 268 bp overlap
ChIP MCF-7 ENCFF219LIX 268 bp overlap
ChIP MCF-7 ENCFF219LIX 242 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 268 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 268 bp overlap
ChIP Panc1 ENCFF829HHL 268 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 145 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 268 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCFF191NFH 182 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 99 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 220 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 268 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 130 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 258 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 266 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 184 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 183 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 253 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 223 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 208 bp overlap
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