chr1 : 247,335,608 247,336,456
848 bp 78 TFs 3 linked genes
This 848 bp open chromatin element is linked to NLRP3, ZNF496-DT, and ZNF496 and is bound by 78 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
NLRP3 3.3 kb Proximal Proximity
ZNF496-DT 3.6 kb Proximal Proximity
ZNF496 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:247,330,608 – 247,341,456
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP K-562 GSE120104.AGO1.K-562 273 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 127 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 88 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 151 bp overlap
CREB1 4 datasets
ChIP HepG2 ENCFF792THT 52 bp overlap
ChIP MCF-7 ENCFF341ZEM 55 bp overlap
ChIP MCF-7 ENCFF867SAS 74 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 59 bp overlap
CTCF 5 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 202 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 95 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 155 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 123 bp overlap
EGR1 4 datasets
Motif ES_0h ES_0h-EGR1_MA0162.5 10 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 137 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF895KGN 385 bp overlap
EGR2 1 dataset
Motif ES_0h ES_0h-EGR2_MA0472.2 11 bp overlap
EGR3 1 dataset
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif ES_0h ES_0h-EGR4_MA0733.2 11 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 177 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 194 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 56 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 94 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 277 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 217 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 171 bp overlap
HOXB13 2 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 257 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 59 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 220 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 264 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 368 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF15 1 dataset
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 201 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 360 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 203 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 107 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 314 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 222 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 342 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 307 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 7 datasets
ChIP HepG2 ENCFF350RIU 485 bp overlap
ChIP HepG2 ENCFF350RIU 517 bp overlap
ChIP IMR-90 ENCFF672YWV 327 bp overlap
ChIP K562 ENCFF215CWW 75 bp overlap
ChIP K562 ENCFF643HGX 511 bp overlap
ChIP K562 ENCFF836GHX 215 bp overlap
ChIP PFSK-1 ENCFF576NIT 454 bp overlap
POLR2G 4 datasets
ChIP K562 ENCFF047BLG 267 bp overlap
ChIP K562 ENCFF047BLG 630 bp overlap
ChIP K562 ENCFF047BLG 194 bp overlap
ChIP K562 ENCFF648YPL 194 bp overlap
PPARD 3 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RBAK 1 dataset
ChIP HepG2 ENCFF712MSJ 358 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 181 bp overlap
ChIP K562 ENCFF196WTG 565 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 2 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
Rxra 2 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 323 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 155 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP9 2 datasets
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 158 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 313 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 514 bp overlap
SUPT5H 4 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 105 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 213 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 305 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 172 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 227 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 240 bp overlap
YY1 5 datasets
ChIP A-549 ENCSR000BPM.YY1.A-549 152 bp overlap
ChIP H1 ENCFF524BTL 248 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 161 bp overlap
ChIP K562 ENCFF660QRE 235 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 219 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 647 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF799 1 dataset
ChIP HEK293T GSE78099.ZNF799.HEK293T 230 bp overlap