chr17 : 27,939,884 27,941,043
1,159 bp 80 TFs 2 linked genes
This 1.2 kb open chromatin element is linked to LYRM9 and NLK and is bound by 80 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LYRM9 46.9 kb Distal Multiome
NLK 101.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:27,934,884 – 27,946,043
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 309 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 246 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 107 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 60 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 219 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 224 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 263 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 341 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 101 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 267 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 138 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 282 bp overlap
ChIP hESC GSE26097.EOMES.hESC 145 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 300 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 397 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 588 bp overlap
ChIP DE DE-FOXA2-1 427 bp overlap
ChIP DE DE-FOXA2-2 608 bp overlap
ChIP DE DE-FOXA2-2 457 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 148 bp overlap
GATA1 2 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 90 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 1090 bp overlap
ChIP DE DE-GATA4-2 1159 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 557 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 536 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 464 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 298 bp overlap
ChIP DE DE-GATA6-1 1159 bp overlap
ChIP DE DE-GATA6-2 1141 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 595 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 366 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 418 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 984 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1159 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 1035 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 322 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1075 bp overlap
ChIP foregut GSE117136.GATA6.foregut 648 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 318 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 531 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 445 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 236 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 244 bp overlap
HNF4A 2 datasets
ChIP liver ENCFF354NRH 188 bp overlap
ChIP liver ENCFF449HPV 327 bp overlap
HNF4G 1 dataset
ChIP liver ENCSR297GII.HNF4G.liver 162 bp overlap
IKZF1 6 datasets
ChIP GM12878 ENCFF616FJX 137 bp overlap
ChIP GM12878 ENCFF616FJX 372 bp overlap
ChIP GM12878 ENCFF616FJX 571 bp overlap
ChIP GM12878 ENCFF753XDO 306 bp overlap
ChIP GM12878 ENCFF824TGK 60 bp overlap
ChIP GM12878 ENCFF824TGK 319 bp overlap
IKZF2 5 datasets
ChIP GM12878 ENCFF238LYK 169 bp overlap
ChIP GM12878 ENCFF918AID 59 bp overlap
ChIP GM12878 ENCFF918AID 279 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 72 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 61 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 302 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 220 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCFF995GXC 124 bp overlap
ChIP GM12878 ENCFF995GXC 327 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 97 bp overlap
MTA2 3 datasets
ChIP GM12878 ENCFF615CWQ 176 bp overlap
ChIP GM12878 ENCFF615CWQ 390 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 264 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 482 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 156 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 485 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 267 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 226 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 192 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 209 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 258 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 356 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 181 bp overlap
RAD51 3 datasets
ChIP GM12878 ENCFF916JXQ 106 bp overlap
ChIP GM12878 ENCFF916JXQ 306 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 71 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 52 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 141 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 206 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 465 bp overlap
ChIP liver ENCFF807CIA 451 bp overlap
SCRT1 3 datasets
ChIP HEK293 ENCFF513YVP 248 bp overlap
ChIP HEK293 ENCFF513YVP 417 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 222 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 243 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 138 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 165 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1128 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1060 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1095 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 222 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 235 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 177 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 331 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 280 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX21 2 datasets
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 511 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 226 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 101 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 405 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 379 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
TFAP2E 1 dataset
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
TRIM22 3 datasets
ChIP GM12878 ENCFF919OMX 110 bp overlap
ChIP GM12878 ENCFF919OMX 310 bp overlap
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 231 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 126 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN3 1 dataset
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF530 2 datasets
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF558 1 dataset
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF682 1 dataset
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap