chr16 : 54,291,177 54,291,532
355 bp 69 TFs 2 linked genes
This 355 bp open chromatin element is linked to IRX3 and ENSG00000283689 and is bound by 69 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
IRX3 4.4 kb Proximal Proximity
ENSG00000283689 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:54,286,177 – 54,296,532
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 80 bp overlap
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 322 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF252VFI 355 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 355 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 175 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 272 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 296 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 355 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 178 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 303 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 277 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 355 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 212 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 129 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 355 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 319 bp overlap
CTCF 1 dataset
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 56 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF364PUR 206 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 230 bp overlap
ESR1 4 datasets
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 127 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 157 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 180 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 344 bp overlap
EZH2 13 datasets
ChIP GM23338 ENCFF613YON 355 bp overlap
ChIP GM23338 ENCFF613YON 355 bp overlap
ChIP H1 ENCFF232NZA 355 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 355 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 303 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 286 bp overlap
ChIP astrocyte ENCFF365JTP 355 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 355 bp overlap
ChIP hepatocyte ENCFF118DKH 184 bp overlap
ChIP hepatocyte ENCFF552DZB 355 bp overlap
ChIP neural cell ENCFF610EPB 109 bp overlap
ChIP neural progenitor cell ENCFF018MKA 355 bp overlap
ChIP neural progenitor cell ENCFF472NFV 355 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 318 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 252 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 287 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 183 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 355 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 220 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 355 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 239 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 355 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 355 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 146 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 136 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 158 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 226 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 214 bp overlap
NRL 1 dataset
ChIP HepG2 ENCFF528PUT 134 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 160 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 200 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 271 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 305 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 355 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 355 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 212 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 178 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 355 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 293 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 302 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 355 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 215 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 210 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 177 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF939HTZ 355 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 355 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 178 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 355 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 295 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 218 bp overlap
RXRA 1 dataset
ChIP HepG2 ENCFF763IEA 323 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 355 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 165 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 223 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 355 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 293 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 209 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 355 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 286 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 273 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 355 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 353 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 159 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 355 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 160 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 153 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 355 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 355 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 291 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 134 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 173 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 158 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 176 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 133 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 260 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 226 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 273 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 284 bp overlap