chr15 : 59,785,977 59,786,995
1,018 bp 90 TFs 2 linked genes
This 1.0 kb open chromatin element is linked to BNIP2 and GTF2A2 and is bound by 90 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
BNIP2 97.2 kb Distal Multiome
GTF2A2 129.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:59,780,977 – 59,791,995
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 213 bp overlap
ATF2 1 dataset
ChIP HEK293 ENCFF194VKZ 385 bp overlap
BCL11A 1 dataset
ChIP HEK293 ENCFF294OHB 361 bp overlap
BCL6B 1 dataset
ChIP HEK293 ENCFF555YRB 365 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 262 bp overlap
Crx 2 datasets
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 2 datasets
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 172 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 237 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 569 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 258 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 4 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 189 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 783 bp overlap
ChIP DE DE-FOXA2-2 923 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 813 bp overlap
ChIP DE DE-GATA4-2 949 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 790 bp overlap
ChIP DE DE-GATA6-2 960 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 823 bp overlap
GLI3 4 datasets
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 408 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 639 bp overlap
GSC 2 datasets
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
INSM1 2 datasets
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
Motif DE_72h DE_72h-INSM1_MA0155.1 12 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 678 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCFF159QSW 437 bp overlap
KLF7 1 dataset
ChIP HEK293 ENCFF599UKL 371 bp overlap
MAF 1 dataset
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFF 1 dataset
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA1640.2 9 bp overlap
Mafb 1 dataset
Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR5A1 2 datasets
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NRL 1 dataset
Motif DE_72h DE_72h-NRL_MA0842.3 12 bp overlap
Nfe2l2 1 dataset
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
OTX1 2 datasets
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
OVOL3 1 dataset
ChIP HEK293 ENCFF898STB 357 bp overlap
PBX2 1 dataset
Motif DE_72h DE_72h-PBX2_MA1113.3 9 bp overlap
PITX1 2 datasets
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 202 bp overlap
POU4F2 1 dataset
Motif DE_72h DE_72h-POU4F2_MA0683.2 15 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 233 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
RHOXF1 2 datasets
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RREB1 3 datasets
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
Runx1 4 datasets
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 606 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 638 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 845 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 832 bp overlap
TP53 4 datasets
Motif DE_36h DE_36h-TP53_MA0106.3 18 bp overlap
Motif DE_48h DE_48h-TP53_MA0106.3 18 bp overlap
Motif DE_60h DE_60h-TP53_MA0106.3 18 bp overlap
Motif DE_72h DE_72h-TP53_MA0106.3 18 bp overlap
TP73 4 datasets
Motif DE_36h DE_36h-TP73_MA0861.2 16 bp overlap
Motif DE_48h DE_48h-TP73_MA0861.2 16 bp overlap
Motif DE_60h DE_60h-TP73_MA0861.2 16 bp overlap
Motif DE_72h DE_72h-TP73_MA0861.2 16 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 161 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCFF893BGV 337 bp overlap
Vdr 4 datasets
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap
Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
Wt1 2 datasets
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZEB1 4 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 183 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 248 bp overlap
ZNF148 2 datasets
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 239 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 478 bp overlap
ZNF281 6 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF317 2 datasets
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 528 bp overlap
ZNF341 3 datasets
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
Motif DE_72h DE_72h-ZNF341_MA1655.2 8 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 433 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCFF906MQV 239 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 321 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCFF096ELQ 491 bp overlap
ZNF708 3 datasets
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCFF241QRH 364 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 337 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 311 bp overlap
Zic2 3 datasets
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap