chr13 : 113,397,604 113,398,329
725 bp 76 TFs 8 linked genes
This 725 bp open chromatin element is linked to 8 target genes and is bound by 76 transcription factors.
Linked Genes
8 genes
Gene Expression Dist. to TSS Distance Link type
GRTP1 33.8 kb Distal Multiome
DCUN1D2 92.8 kb Distal Multiome
TMCO3 93.1 kb Distal Multiome
LAMP1 100.7 kb Distal Multiome
TFDP1 186.8 kb Distal Multiome
CUL4A 188.3 kb Distal Multiome
PCID2 189.3 kb Distal Multiome
F10 275.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:113,392,604 – 113,403,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP HepG2 ENCFF096JUW 134 bp overlap
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 109 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 75 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 208 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 165 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 174 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 450 bp overlap
ChIP DE DE-FOXA2-2 382 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 535 bp overlap
ChIP DE DE-GATA4-2 598 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 421 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 498 bp overlap
ChIP DE DE-GATA6-2 609 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 526 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 325 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 207 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 335 bp overlap
ChIP foregut GSE117136.GATA6.foregut 393 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 498 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 504 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 407 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 179 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 505 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 292 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 225 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 300 bp overlap
LIN54 2 datasets
ChIP HepG2 ENCFF662XDE 253 bp overlap
ChIP HepG2 ENCFF662XDE 683 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF507HCX 296 bp overlap
MEF2D 1 dataset
ChIP HepG2 ENCFF576WDO 384 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 381 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 367 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 172 bp overlap
NR2C1 1 dataset
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
ChIP K562 ENCFF750AXF 725 bp overlap
NR2F1 2 datasets
Motif DE_72h DE_72h-NR2F1_MA1537.2 13 bp overlap
ChIP K562 ENCFF221HJH 252 bp overlap
NR2F6 2 datasets
ChIP HepG2 ENCFF429VKC 441 bp overlap
ChIP K562 ENCFF674RQA 457 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 55 bp overlap
Nr1H2 1 dataset
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr2e1 1 dataset
Motif DE_72h DE_72h-Nr2e1_MA0676.1 9 bp overlap
Nr2f6 1 dataset
Motif DE_72h DE_72h-Nr2f6_MA0677.2 13 bp overlap
PBX2 1 dataset
Motif DE_72h DE_72h-PBX2_MA1113.3 9 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 295 bp overlap
PPARD 1 dataset
Motif DE_72h DE_72h-PPARD_MA1550.2 14 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 113 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 271 bp overlap
ChIP K562 ENCFF653BQJ 434 bp overlap
RORA 1 dataset
Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_72h DE_72h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_72h DE_72h-Rxra_MA0512.2 14 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 144 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 120 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 122 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 444 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 217 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 549 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 437 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 381 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 122 bp overlap
THRB 2 datasets
Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 280 bp overlap
ZMYM2 1 dataset
ChIP HepG2 ENCFF575OMW 183 bp overlap
ZNF143 4 datasets
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 294 bp overlap
ChIP HepG2 ENCFF658YIR 491 bp overlap
ChIP HepG2 ENCFF658YIR 491 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap
ZNF331 1 dataset
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZNF362 1 dataset
ChIP HepG2 ENCFF256AZN 350 bp overlap
ZNF416 1 dataset
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF582 1 dataset
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF677 1 dataset
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 215 bp overlap
ZNF76 1 dataset
Motif DE_72h DE_72h-ZNF76_MA1716.2 17 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap