chr13 : 112,067,579 112,068,831
1,252 bp 69 TFs 1 linked gene
This 1.3 kb open chromatin element is linked to SOX1 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SOX1 431 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:112,062,579 – 112,073,831
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 778 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 200 bp overlap
BCL11A 2 datasets
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 309 bp overlap
ChIP MDA-MB-157 ERP003925.BCL11A.MDA-MB-157 750 bp overlap
BRCA1 1 dataset
ChIP TC-32 GSE87324.BRCA1.TC-32 144 bp overlap
BRD4 8 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 57 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 227 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 676 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 871 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 117 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 240 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 161 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 592 bp overlap
CBX4 2 datasets
ChIP hMSC GSE117084.CBX4.hMSC 387 bp overlap
ChIP hMSC GSE117084.CBX4.hMSC 192 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 1083 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 903 bp overlap
ChIP hESC GSE133412.CBX7.hESC 1023 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 895 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 212 bp overlap
CTBP2 5 datasets
ChIP H1 ENCFF329MAX 349 bp overlap
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 226 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 229 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 298 bp overlap
CTCF 2 datasets
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 365 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 239 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 397 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 943 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 132 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 180 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 144 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 664 bp overlap
EZH2 38 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 453 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 188 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 119 bp overlap
ChIP GM23338 ENCFF613YON 311 bp overlap
ChIP GM23338 ENCFF886DXX 179 bp overlap
ChIP GM23338 ENCFF886DXX 208 bp overlap
ChIP H1 ENCFF232NZA 688 bp overlap
ChIP H1 ENCFF232NZA 734 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 850 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 916 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 827 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 97 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 313 bp overlap
ChIP SK-N-MC ENCFF674XUJ 280 bp overlap
ChIP astrocyte ENCFF365JTP 247 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 295 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 336 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 391 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 196 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 169 bp overlap
ChIP hESC GSE113817.EZH2.hESC 237 bp overlap
ChIP hESC GSE113817.EZH2.hESC 821 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 142 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 184 bp overlap
ChIP hepatocyte ENCFF118DKH 81 bp overlap
ChIP hepatocyte ENCFF552DZB 141 bp overlap
ChIP hepatocyte ENCFF552DZB 210 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 170 bp overlap
ChIP keratinocyte ENCFF070STK 99 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 194 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 92 bp overlap
ChIP neural progenitor cell ENCFF018MKA 189 bp overlap
ChIP neural progenitor cell ENCFF018MKA 445 bp overlap
ChIP neural progenitor cell ENCFF018MKA 282 bp overlap
ChIP neural progenitor cell ENCFF472NFV 235 bp overlap
ChIP neural progenitor cell ENCFF472NFV 562 bp overlap
ChIP neural progenitor cell ENCFF472NFV 277 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 283 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 186 bp overlap
FOXO1 2 datasets
ChIP CD34 GSE80773.FOXO1.CD34 286 bp overlap
ChIP CD34 GSE80773.FOXO1.CD34 169 bp overlap
GABPA 2 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 134 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 179 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
HMGB1 1 dataset
ChIP HUVEC-C GSE98245.HMGB1.HUVEC-C 225 bp overlap
JARID2 7 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 284 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 104 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 96 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 141 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 112 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 341 bp overlap
ChIP hESC GSE133412.JARID2.hESC 803 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 344 bp overlap
KDM4A 7 datasets
ChIP H1 ENCFF078LED 180 bp overlap
ChIP H1 ENCFF078LED 701 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 671 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 222 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 239 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 209 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 163 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 261 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 259 bp overlap
MBD2 2 datasets
ChIP HeLa GSE41006.MBD2.HeLa 586 bp overlap
ChIP HeLa GSE41006.MBD2.HeLa 213 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 153 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 217 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 262 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 85 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 129 bp overlap
NR2F2 3 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 815 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 51 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 994 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 636 bp overlap
PCGF1 1 dataset
ChIP HEK293T_PCGF135fl GSE119618.PCGF1.HEK293T_PCGF135fl 851 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 1023 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 277 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 76 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 1252 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 185 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 1252 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 306 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 84 bp overlap
RBBP5 4 datasets
ChIP H1 ENCFF905HFL 576 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 156 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 235 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 118 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 53 bp overlap
RNF2 10 datasets
ChIP H1 ENCFF239FFS 210 bp overlap
ChIP H1 ENCFF239FFS 208 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 1155 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 1210 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 1179 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 1099 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 1103 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 941 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.RNF2.HEK293T_PCGF2fl_OHT 287 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 797 bp overlap
RUNX1 1 dataset
ChIP H9_DOX-5_HA GSE137670.RUNX1.H9_DOX-5_HA 246 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 90 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 477 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 271 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 166 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 335 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 333 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 350 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 448 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 267 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 379 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 225 bp overlap
ChIP NCI-H1703 GSE121755.SMARCA4.NCI-H1703 210 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 903 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 86 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 227 bp overlap
SMC1 1 dataset
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 160 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 181 bp overlap
ChIP neural cell ENCFF795YGY 365 bp overlap
ChIP neural cell ENCFF795YGY 119 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 137 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 332 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 182 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 253 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 86 bp overlap
SUZ12 13 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 119 bp overlap
ChIP H1 ENCFF881NFR 1252 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 1252 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 1169 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 1180 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 1169 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 76 bp overlap
ChIP NT2/D1 ENCFF574SXS 204 bp overlap
ChIP NT2/D1 ENCFF574SXS 358 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 565 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 190 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 426 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.SUZ12.hiPSC_WTa_RNase-neg 161 bp overlap
TAF1 1 dataset
ChIP neural cell ENCFF468SPD 291 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 110 bp overlap
TFAP2C 4 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 212 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 242 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 190 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 113 bp overlap
TP63 2 datasets
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 213 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 199 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 200 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 181 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 277 bp overlap
ZBTB14 2 datasets
Motif DE_12h DE_12h-ZBTB14_MA1650.2 8 bp overlap
ChIP HEK293 GSE76494.ZBTB14.HEK293 187 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 97 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 99 bp overlap