chr13 : 112,060,987 – 112,061,877
890 bp 74 TFs 1 linked gene
This 890 bp open chromatin element is linked to SOX1 and is bound by 74 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX1 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:112,055,987 – 112,066,877
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 249 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 890 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 890 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 890 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 890 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 439 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 288 bp overlap
BRD4 6 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 576 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 519 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 500 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 890 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 302 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 187 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 235 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CBX7 3 datasets
ChIP hESC GSE133412.CBX7.hESC 117 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 79 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 110 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 582 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 506 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 240 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 404 bp overlap
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 866 bp overlap
CTCF 2 datasets
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 74 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 125 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 384 bp overlap
EED 2 datasets
ChIP ProEs GSE59087.EED.ProEs 110 bp overlap
ChIP ProEs GSE59087.EED.ProEs 160 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 145 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 200 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 414 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 195 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 321 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 50 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 890 bp overlap
ChIP A673 ENCFF790MVL 527 bp overlap
ChIP A673 ENCFF790MVL 637 bp overlap
ChIP A673 ENCFF955JRZ 93 bp overlap
ChIP A673 ENCFF955JRZ 527 bp overlap
ChIP GM23248 ENCFF404ZHM 129 bp overlap
ChIP GM23248 ENCFF404ZHM 589 bp overlap
ChIP GM23338 ENCFF613YON 890 bp overlap
ChIP GM23338 ENCFF886DXX 144 bp overlap
ChIP GM23338 ENCFF886DXX 671 bp overlap
ChIP H1 ENCFF232NZA 890 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 890 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 819 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 890 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 546 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 298 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 295 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 262 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 890 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 890 bp overlap
ChIP SK-N-MC ENCFF674XUJ 60 bp overlap
ChIP SK-N-MC ENCFF674XUJ 498 bp overlap
ChIP T98G GSE112240.EZH2.T98G 152 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 890 bp overlap
ChIP astrocyte ENCFF365JTP 685 bp overlap
ChIP astrocyte ENCFF365JTP 716 bp overlap
ChIP astrocyte ENCFF365JTP 508 bp overlap
ChIP astrocyte ENCFF365JTP 308 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 779 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 533 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 506 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 506 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 820 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 552 bp overlap
ChIP hESC GSE113817.EZH2.hESC 512 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 53 bp overlap
ChIP hepatocyte ENCFF552DZB 890 bp overlap
ChIP keratinocyte ENCFF070STK 520 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCFF070STK 483 bp overlap
ChIP keratinocyte ENCFF070STK 186 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 488 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 617 bp overlap
ChIP neural progenitor cell ENCFF018MKA 890 bp overlap
ChIP neural progenitor cell ENCFF472NFV 890 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 248 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 540 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 424 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 115 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 188 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 571 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
GABPA 3 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 170 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 234 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 142 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 308 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 266 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 163 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 278 bp overlap
Hand1 1 dataset
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 890 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 890 bp overlap
ChIP hESC GSE133412.JARID2.hESC 100 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 115 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 202 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 404 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 319 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 890 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 169 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 283 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 301 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 173 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 890 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 224 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 200 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 634 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 144 bp overlap
NFIB 1 dataset
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NR1I2 1 dataset
Motif ES_0h ES_0h-NR1I2_MA1533.2 15 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 853 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 890 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 873 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 310 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 883 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 890 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 890 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 890 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 880 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 243 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 385 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 210 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 387 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 172 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 114 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 298 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 890 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 201 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 277 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 242 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 890 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 239 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 498 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 890 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 276 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 226 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 321 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 554 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 315 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 139 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 409 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 392 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 420 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 209 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 890 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 890 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 218 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 345 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 196 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 791 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 319 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 239 bp overlap
SUZ12 14 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 890 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 68 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 58 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 54 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 199 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 890 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 153 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 890 bp overlap
ChIP NT2/D1 ENCFF574SXS 445 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 868 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 99 bp overlap
ChIP hESC_TKO GSE133412.SUZ12.hESC_TKO 79 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 239 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TRIM25 2 datasets
ChIP BT-549 GSE79588.TRIM25.BT-549 210 bp overlap
ChIP BT-549 GSE79588.TRIM25.BT-549 210 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 422 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 205 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 264 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 343 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 467 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 140 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 746 bp overlap
ZNF141 1 dataset
ChIP HEK293T GSE78099.ZNF141.HEK293T 163 bp overlap
ZNF454 1 dataset
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 241 bp overlap
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