chr13 : 71,014,951 – 71,016,090
1,139 bp 94 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to LINC00348 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00348 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:71,009,951 – 71,021,090
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 389 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 299 bp overlap
Bach1::Mafk 2 datasets
Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CDX1 3 datasets
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
Motif DE_72h DE_72h-CDX1_MA0878.3 10 bp overlap
CDX2 4 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 204 bp overlap
Motif DE_48h DE_48h-CDX2_MA0465.3 8 bp overlap
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
Motif DE_72h DE_72h-CDX2_MA0465.3 8 bp overlap
CDX4 3 datasets
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
Motif DE_72h DE_72h-CDX4_MA1473.2 9 bp overlap
EBF3 2 datasets
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
ERF::FOXO1 1 dataset
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Ebf2 2 datasets
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
Elf5 1 dataset
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 529 bp overlap
ChIP DE DE-FOXA2-2 479 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 885 bp overlap
ChIP DE DE-GATA4-2 827 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 332 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 546 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 191 bp overlap
ChIP DE DE-GATA6-1 562 bp overlap
ChIP DE DE-GATA6-2 1041 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 796 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 506 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 412 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 531 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 324 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 301 bp overlap
ChIP foregut GSE117136.GATA6.foregut 404 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 303 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 277 bp overlap
GRHL2 3 datasets
Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HES6 2 datasets
Motif DE_60h DE_60h-HES6_MA1493.1 10 bp overlap
Motif DE_72h DE_72h-HES6_MA1493.1 10 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
HOXA10 3 datasets
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXB13 3 datasets
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
HOXC11 3 datasets
Motif DE_48h DE_48h-HOXC11_MA0651.3 11 bp overlap
Motif DE_60h DE_60h-HOXC11_MA0651.3 11 bp overlap
Motif DE_72h DE_72h-HOXC11_MA0651.3 11 bp overlap
HOXC12 3 datasets
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
Motif DE_60h DE_60h-HOXC12_MA0906.2 10 bp overlap
Motif DE_72h DE_72h-HOXC12_MA0906.2 10 bp overlap
HOXD11 3 datasets
Motif DE_48h DE_48h-HOXD11_MA0908.2 9 bp overlap
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
Motif DE_72h DE_72h-HOXD11_MA0908.2 9 bp overlap
HOXD9 3 datasets
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 3 datasets
Motif DE_48h DE_48h-Hoxa11_MA0911.2 9 bp overlap
Motif DE_60h DE_60h-Hoxa11_MA0911.2 9 bp overlap
Motif DE_72h DE_72h-Hoxa11_MA0911.2 9 bp overlap
Hoxa13 3 datasets
Motif DE_48h DE_48h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 3 datasets
Motif DE_48h DE_48h-Hoxd13_MA0909.4 7 bp overlap
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
Motif DE_72h DE_72h-Hoxd13_MA0909.4 7 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
KLF13 3 datasets
Motif DE_48h DE_48h-KLF13_MA0657.2 17 bp overlap
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 222 bp overlap
LIN54 1 dataset
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MAF::NFE2 2 datasets
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_72h DE_72h-MAFNFE2_MA0501.2 11 bp overlap
MAFF 1 dataset
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_72h DE_72h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 2 datasets
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 4 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA1640.2 9 bp overlap
MGA::EVX1 2 datasets
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MXI1 2 datasets
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
Mafb 1 dataset
Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap
Mafg 2 datasets
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NEUROG1 2 datasets
Motif DE_60h DE_60h-NEUROG1_MA0623.2 10 bp overlap
Motif DE_72h DE_72h-NEUROG1_MA0623.2 10 bp overlap
NEUROG2 2 datasets
Motif DE_60h DE_60h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_72h DE_72h-NEUROG2_MA0669.1 10 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NRL 1 dataset
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
Nfat5 2 datasets
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nfe2l2 2 datasets
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
Nr2F6 2 datasets
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
ONECUT2 1 dataset
Motif DE_60h DE_60h-ONECUT2_MA0756.3 8 bp overlap
PBX2 1 dataset
Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap
Pparg::Rxra 1 dataset
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
Prdm15 1 dataset
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
SIX1 2 datasets
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 246 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 322 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
STAT3 1 dataset
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Six4 2 datasets
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
Motif DE_72h DE_72h-Six4_MA2001.2 7 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TEAD1 2 datasets
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD2 2 datasets
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 396 bp overlap
YY1 8 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 214 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 245 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 235 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 95 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 180 bp overlap
ChIP liver ENCFF400MBC 229 bp overlap
ChIP liver ENCFF515BWJ 454 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 204 bp overlap
ZBTB24 2 datasets
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZNF136 1 dataset
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap
ZNF148 3 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 265 bp overlap
ChIP K562 ENCFF352SDL 445 bp overlap
ChIP K562 ENCFF352SDL 621 bp overlap
ZNF16 1 dataset
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF320 2 datasets
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF708 1 dataset
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF768 3 datasets
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF85 3 datasets
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
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