chr13 : 62,036,053 – 62,036,672
619 bp 100 TFs 1 linked gene
This 619 bp open chromatin element is linked to LINC00358 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00358 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:62,031,053 – 62,041,672
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ATF4 2 datasets
ChIP HUDEP-2 GSE143961.ATF4.HUDEP-2 217 bp overlap
ChIP HUDEP-2_KO GSE143961.ATF4.HUDEP-2_KO 185 bp overlap
Atoh1 1 dataset
Motif DE_60h DE_60h-Atoh1_MA0461.3 8 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 69 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 119 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 375 bp overlap
CDX1 1 dataset
Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
CEBPA 3 datasets
Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 249 bp overlap
CEBPB 3 datasets
Motif DE_36h DE_36h-CEBPB_MA0466.4 10 bp overlap
Motif DE_48h DE_48h-CEBPB_MA0466.4 10 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
CEBPE 2 datasets
Motif DE_36h DE_36h-CEBPE_MA0837.3 10 bp overlap
Motif DE_48h DE_48h-CEBPE_MA0837.3 10 bp overlap
CEBPG 2 datasets
Motif DE_36h DE_36h-CEBPG_MA0838.1 10 bp overlap
Motif DE_48h DE_48h-CEBPG_MA0838.1 10 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 268 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 200 bp overlap
ERF::FIGLA 1 dataset
Motif DE_36h DE_36h-ERFFIGLA_MA1934.2 13 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 261 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
ETV5::HOXA2 3 datasets
Motif DE_36h DE_36h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap
Elf5 3 datasets
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 540 bp overlap
ChIP DE DE-FOXA2-2 484 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 295 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 372 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 260 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 249 bp overlap
ChIP erythroblast ENCFF867JAR 464 bp overlap
ChIP erythroblast ENCFF867JAR 559 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 553 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 300 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 290 bp overlap
GATA2 6 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 335 bp overlap
ChIP CD34_DMSO GSE60792.GATA2.CD34_DMSO 223 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 486 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 255 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 515 bp overlap
ChIP DE DE-GATA4-2 458 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 373 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 429 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 288 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 474 bp overlap
ChIP DE DE-GATA6-2 490 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 292 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 352 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 584 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 469 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 366 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 425 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 310 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Gfi1B 2 datasets
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HOXA10 1 dataset
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Hmx2 3 datasets
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
IKZF2 3 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
ISL2 3 datasets
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 270 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 313 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 280 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 3 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 231 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 220 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 220 bp overlap
MSC 1 dataset
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYF6 3 datasets
Motif DE_36h DE_36h-MYF6_MA0667.1 10 bp overlap
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_36h DE_36h-MYOD1_MA0499.3 9 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 267 bp overlap
NFYA 2 datasets
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
NKX2-3 3 datasets
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 3 datasets
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_60h DE_60h-NR1H2RXRA_MA0115.1 17 bp overlap
NR1I3 3 datasets
Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap
Motif DE_48h DE_48h-NR1I3_MA1534.2 8 bp overlap
Motif DE_60h DE_60h-NR1I3_MA1534.2 8 bp overlap
Nkx2-1 3 datasets
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_60h DE_60h-Nkx2-1_MA1994.2 7 bp overlap
Nkx3-2 3 datasets
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
Nr2f6 1 dataset
Motif DE_60h DE_60h-Nr2f6_MA0677.2 13 bp overlap
PBX3 3 datasets
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 3 datasets
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POU1F1 3 datasets
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU2F2 3 datasets
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F2 3 datasets
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 3 datasets
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU4F2 1 dataset
Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap
Pax7 1 dataset
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 315 bp overlap
RUNX1 3 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 210 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 255 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 255 bp overlap
SATB1 3 datasets
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
Motif DE_48h DE_48h-SATB1_MA1963.2 7 bp overlap
Motif DE_60h DE_60h-SATB1_MA1963.2 7 bp overlap
SMAD1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 182 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 452 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 469 bp overlap
SNAI2 1 dataset
Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 293 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 416 bp overlap
SP5_Zebrafish 1 dataset
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 251 bp overlap
SPIB 2 datasets
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
SRF 2 datasets
Motif DE_36h DE_36h-SRF_MA0083.3 16 bp overlap
Motif DE_60h DE_60h-SRF_MA0083.3 16 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 275 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 312 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 314 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 254 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 200 bp overlap
TAL1_SCL 1 dataset
ChIP Jurkat GSE25000.TAL1_SCL.Jurkat 85 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 213 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 250 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Vdr 3 datasets
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap
Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap
ZBTB17 1 dataset
Motif DE_36h DE_36h-ZBTB17_MA2102.1 8 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 247 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 2 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 2 datasets
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
ZNF189 3 datasets
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF24 3 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF701 2 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZNF777 1 dataset
ChIP HEK293T GSE78099.ZNF777.HEK293T 291 bp overlap
ZSCAN21 3 datasets
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
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