chr13 : 54,387,663 54,388,090
427 bp 109 TFs 0 linked genes
This 427 bp open chromatin element has no linked target genes and is bound by 109 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:54,382,663 – 54,393,090
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
BCL6 1 dataset
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 196 bp overlap
BRD4 1 dataset
ChIP COLO-320 GSE73319.BRD4.COLO-320 427 bp overlap
CDX2 1 dataset
ChIP COLO-320 GSE30026.CDX2.COLO-320 95 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 242 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 199 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 427 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 276 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 281 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 244 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 319 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 239 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
LHX5 1 dataset
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MEOX1 1 dataset
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 298 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 234 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 427 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 427 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 241 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 427 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 427 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 427 bp overlap
ChIP hESC GSE18292.NANOG.hESC 211 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFKB1 1 dataset
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NIPBL 2 datasets
ChIP WA09 GSE105028.NIPBL.WA09 264 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 373 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PDX1 1 dataset
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 415 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP GM23338 ENCFF333SNB 262 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 427 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 259 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 379 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 204 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 299 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 427 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 275 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 175 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 427 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 326 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 401 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 277 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 427 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 427 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 224 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 153 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 207 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 317 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 390 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 361 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 317 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 328 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 327 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 379 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 292 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 398 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 420 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 308 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 316 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 294 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 248 bp overlap
ChIP hESC GSE18292.SOX2.hESC 98 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 315 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 292 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 304 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 199 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 246 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 292 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 253 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 209 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 300 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 54 bp overlap
ChIP HEK293T GSE78099.ZNF317.HEK293T 75 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap