chr12 : 93,426,457 93,427,111
654 bp 73 TFs 0 linked genes
This 654 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:93,421,457 – 93,432,111
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP GSE110655.AR.LNCaP 152 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 302 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 157 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 248 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 170 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 258 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 190 bp overlap
BCL6 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 146 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 172 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 107 bp overlap
CREB3L1 1 dataset
Motif DE_36h DE_36h-CREB3L1_MA0839.2 13 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 242 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 191 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 261 bp overlap
ELL2 1 dataset
ChIP HeLa GSE40632.ELL2.HeLa 150 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 298 bp overlap
ERG 2 datasets
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 206 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 156 bp overlap
FOXA1 9 datasets
ChIP LNCaP GSE64656.FOXA1.LNCaP 190 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 131 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 200 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 347 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 164 bp overlap
ChIP primary-prostate-cancer_P4_DSG GSE114737.FOXA1.primary-prostate-cancer_P4_DSG 177 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 175 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 139 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 189 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 507 bp overlap
ChIP DE DE-FOXA2-2 510 bp overlap
FOXO1 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 144 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 123 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 91 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 291 bp overlap
GATA2 2 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 605 bp overlap
ChIP DE DE-GATA4-2 654 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 225 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 654 bp overlap
ChIP DE DE-GATA6-2 585 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 443 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 565 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 459 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 598 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 499 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 433 bp overlap
GFI1 1 dataset
ChIP NB4 GSE128528.GFI1.NB4 246 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HOXB13 12 datasets
ChIP G-401 GSE65381.HOXB13.G-401 195 bp overlap
ChIP LNCaP GSE96652.HOXB13.LNCaP 166 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 213 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 108 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 164 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 162 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 195 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 242 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 204 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 228 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 234 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 224 bp overlap
IRF2 1 dataset
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 167 bp overlap
Irf1 1 dataset
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 363 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 300 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 288 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 370 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 119 bp overlap
KMT2A 3 datasets
ChIP MV4-11 GSE79899.KMT2A.MV4-11 219 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 215 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 203 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 302 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 51 bp overlap
MEF2A 2 datasets
ChIP GM12878 ENCFF652BHX 234 bp overlap
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 228 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 297 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 433 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 314 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 285 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 207 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 97 bp overlap
NR1D2 1 dataset
Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap
Nr2e1 1 dataset
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
PBX1 1 dataset
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
PKNOX1 1 dataset
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 278 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 246 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 336 bp overlap
ChIP HepG2 ENCFF561IAJ 330 bp overlap
RELA 1 dataset
ChIP GM12891 ENCSR000EAI.RELA.GM12891 239 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 301 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 311 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 330 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 622 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 508 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 494 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 654 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 654 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 180 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 141 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 266 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 486 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 111 bp overlap
Stat4 1 dataset
Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 236 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1575.2 17 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 125 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 223 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 219 bp overlap
ZBTB26 1 dataset
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 126 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF282 2 datasets
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF324 1 dataset
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
ZNF384 1 dataset
ChIP GM12878 ENCFF229VSP 89 bp overlap
ZNF44 1 dataset
ChIP HEK293T GSE78099.ZNF44.HEK293T 181 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 242 bp overlap
ZNF565 1 dataset
ChIP HEK293T GSE78099.ZNF565.HEK293T 200 bp overlap
ZNF582 2 datasets
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF682 1 dataset
Motif DE_36h DE_36h-ZNF682_MA1599.2 11 bp overlap