chr12 : 24,014,870 24,015,303
433 bp 57 TFs 0 linked genes
This 433 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:24,009,870 – 24,020,303
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 433 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 85 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 356 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 132 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 53 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 349 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 216 bp overlap
BRD4 13 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 433 bp overlap
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 210 bp overlap
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 217 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 409 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 185 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 302 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 125 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 356 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 341 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 289 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 433 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 200 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 152 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 202 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 433 bp overlap
ChIP H1 ENCFF126NLU 222 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 235 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 433 bp overlap
CTCF 5 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 433 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 179 bp overlap
ChIP liver ENCFF895ERR 251 bp overlap
ChIP tibial nerve ENCFF475AOE 395 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 300 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 244 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 198 bp overlap
EP300 3 datasets
ChIP hESC GSE17917.EP300.hESC 350 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 304 bp overlap
ChIP neural cell ENCFF442QNK 383 bp overlap
ESRRA 2 datasets
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 265 bp overlap
ChIP K562 ENCFF968PEP 303 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 285 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 177 bp overlap
GATA2 2 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 222 bp overlap
ChIP HepG2 ENCFF905PYM 292 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 330 bp overlap
ChIP DE DE-GATA4-2 433 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 336 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 369 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 360 bp overlap
ChIP DE DE-GATA6-2 433 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 433 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 406 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 433 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 433 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 339 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 119 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 370 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 238 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 140 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 98 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 433 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 145 bp overlap
JUND 1 dataset
ChIP H1 ENCFF010YXS 311 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 159 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 98 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 202 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 353 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 269 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 194 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 404 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 134 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 417 bp overlap
ChIP hESC GSE18292.NANOG.hESC 141 bp overlap
ChIP hESC GSE18292.NANOG.hESC 164 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 342 bp overlap
ChIP K562 ENCFF221HJH 241 bp overlap
NR2F2 1 dataset
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 159 bp overlap
NR2F6 5 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 266 bp overlap
ChIP HepG2 ENCFF429VKC 314 bp overlap
ChIP HepG2 ENCFF514UJI 258 bp overlap
ChIP K-562 ENCSR707QWA.NR2F6.K-562 274 bp overlap
ChIP K562 ENCFF674RQA 309 bp overlap
NUTM1 2 datasets
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 222 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 433 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 169 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 397 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 173 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 334 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 87 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 141 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 153 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 75 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 433 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 433 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 433 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 433 bp overlap
RARA 4 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 151 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 315 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 232 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 75 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 250 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 286 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 282 bp overlap
ChIP K562 ENCFF421AVO 345 bp overlap
ChIP K562 ENCFF809XVG 332 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 341 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 433 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 107 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 433 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 321 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 433 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 433 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 267 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 124 bp overlap
SMC1 3 datasets
ChIP HAP1 GSE94992.SMC1.HAP1 273 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 384 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 429 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 229 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 226 bp overlap
SOX2 7 datasets
ChIP H9 GSE46837.SOX2.H9 177 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 433 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 393 bp overlap
ChIP hESC GSE18292.SOX2.hESC 185 bp overlap
ChIP hESC GSE18292.SOX2.hESC 98 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 323 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 433 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 433 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
STAT3 1 dataset
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 137 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 235 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 191 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 196 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 321 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 270 bp overlap