chr12 : 13,430,873 13,431,921
1,048 bp 105 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 105 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:13,425,873 – 13,436,921
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
AR 12 datasets
ChIP LNCaP GSE64656.AR.LNCaP 258 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 151 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 397 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 119 bp overlap
ChIP LNCaP_Bag-1L_KO_DHT GSE89938.AR.LNCaP_Bag-1L_KO_DHT 178 bp overlap
ChIP LNCaP_Bag1L_KO_Bag1L_Rescue_DHT_4h GSE89938.AR.LNCaP_Bag1L_KO_Bag1L_Rescue_DHT_4h 310 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 133 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 285 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 160 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 161 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 297 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 65 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 276 bp overlap
ATF2 1 dataset
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
CREB1 1 dataset
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
Dux 2 datasets
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 300 bp overlap
ETV1 1 dataset
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap
FIGLA 3 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 5 datasets
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 130 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 234 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 164 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 412 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 477 bp overlap
ChIP DE DE-FOXA2-1 1044 bp overlap
ChIP DE DE-FOXA2-2 983 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 474 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 219 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE133072.GATA3.MCF-7 189 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 234 bp overlap
ChIP DE DE-GATA4-1 1048 bp overlap
ChIP DE DE-GATA4-2 1048 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 951 bp overlap
ChIP foregut GSE117136.GATA4.foregut 907 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 1020 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 757 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 235 bp overlap
ChIP DE DE-GATA6-1 1014 bp overlap
ChIP DE DE-GATA6-2 1048 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 646 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 940 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 712 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1047 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1039 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 726 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1048 bp overlap
ChIP foregut GSE117136.GATA6.foregut 887 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 261 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 355 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 366 bp overlap
Gata3 4 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 253 bp overlap
HOXB13 4 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 110 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 211 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 145 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 208 bp overlap
HSF1 3 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
JUN 3 datasets
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 592 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 336 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 262 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MSANTD3 3 datasets
Motif DE_48h DE_48h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_60h DE_60h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_72h DE_72h-MSANTD3_MA1523.2 7 bp overlap
Mecom 5 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Msgn1 1 dataset
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 379 bp overlap
NFIB 1 dataset
Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_72h DE_72h-NFIC_MA1527.2 15 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA1528.2 14 bp overlap
NKX2-2 3 datasets
Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NR2F1 1 dataset
Motif DE_72h DE_72h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif DE_72h DE_72h-NR2F6_MA1539.1 15 bp overlap
NR4A1 4 datasets
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
Motif DE_72h DE_72h-NR4A1_MA1112.3 8 bp overlap
NR4A2 4 datasets
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Motif DE_72h DE_72h-NR4A2_MA0160.3 8 bp overlap
PBX3 3 datasets
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 359 bp overlap
PHOX2B 3 datasets
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 3 datasets
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
POU3F2 1 dataset
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 156 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Plagl1 1 dataset
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RARB 1 dataset
Motif DE_72h DE_72h-RARB_MA1552.2 13 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA1555.1 14 bp overlap
Rarg 3 datasets
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
SCRT1 1 dataset
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_72h DE_72h-SCRT2_MA0744.3 10 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 252 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 960 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 691 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 385 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 477 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1048 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 438 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 298 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 209 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 796 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 856 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBF1 6 datasets
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
SREBF2 3 datasets
Motif DE_48h DE_48h-SREBF2_MA0828.3 10 bp overlap
Motif DE_60h DE_60h-SREBF2_MA0828.3 10 bp overlap
Motif DE_72h DE_72h-SREBF2_MA0828.3 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 286 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 270 bp overlap
TRPS1 4 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZBTB26 1 dataset
Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap
ZEB1 3 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF175 1 dataset
Motif DE_72h DE_72h-ZNF175_MA2332.1 9 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF331 2 datasets
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF530 1 dataset
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF558 3 datasets
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF680 1 dataset
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
ZNF8 3 datasets
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
Motif DE_72h DE_72h-ZNF8_MA1718.1 20 bp overlap
Zic2 4 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap