chr12 : 5,964,934 5,965,282
348 bp 83 TFs 0 linked genes
This 348 bp open chromatin element has no linked target genes and is bound by 83 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:5,959,934 – 5,970,282
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 6 datasets
ChIP DU145 GSE47987.AR.DU145 128 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 113 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 133 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 166 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 153 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 239 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 250 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 325 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 348 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 334 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 348 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 348 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 345 bp overlap
CTCF 5 datasets
ChIP DND41 ENCSR000AQU.CTCF.DND41 74 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 197 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 166 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 125 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 291 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 300 bp overlap
ChIP BLaER1 ENCFF274GAT 139 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 289 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 172 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 200 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 159 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 172 bp overlap
ETS1 4 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 80 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 100 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 80 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 171 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 340 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 206 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 129 bp overlap
FLI1 6 datasets
ChIP A-673 GSE99959.FLI1.A-673 304 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 342 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 326 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 323 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 348 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 331 bp overlap
FOXA1 3 datasets
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 188 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 156 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 112 bp overlap
GABPA 1 dataset
ChIP RWPE-1 GSE29808.GABPA.RWPE-1 94 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 257 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 341 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 129 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 348 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 91 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 72 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 296 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 250 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 348 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 192 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 348 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 293 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 167 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 248 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 348 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 113 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 348 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 348 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 348 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 212 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 182 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 268 bp overlap
NR3C1 3 datasets
ChIP THP-1_Dex GSE99887.NR3C1.THP-1_Dex 156 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 343 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 208 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 183 bp overlap
POLR2A 5 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 348 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 231 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 348 bp overlap
ChIP spleen ENCFF446ZGT 209 bp overlap
ChIP spleen ENCFF446ZGT 206 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 155 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 282 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 348 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RELA 41 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 310 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 329 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 348 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 348 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 339 bp overlap
ChIP HAEC GSE89970.RELA.HAEC 154 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 259 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 335 bp overlap
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 249 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 339 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 331 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 339 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 202 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 227 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 294 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 348 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 333 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 287 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 348 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 331 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 314 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 320 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 326 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 285 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 346 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 348 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 313 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 225 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 295 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 207 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 274 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 228 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 259 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 171 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 102 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 246 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 313 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 348 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 348 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 323 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 310 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 348 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 290 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 278 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 250 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 242 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 307 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 326 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 306 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 270 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 170 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 173 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 291 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 98 bp overlap
ChIP DKO GSE131606.SMC1.DKO 113 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 225 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR000AUC.SUZ12.K-562 247 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 187 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 297 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 121 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 209 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 110 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 348 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 179 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 348 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 348 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 319 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 131 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB43 2 datasets
ChIP WTC11 ENCFF058JUB 293 bp overlap
ChIP WTC11 ENCFF058JUB 71 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 74 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 348 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 277 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 111 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 269 bp overlap
ZNF777 2 datasets
ChIP Hep-G2 ENCSR068ZQR.ZNF777.Hep-G2 225 bp overlap
ChIP HepG2 ENCFF362XDA 329 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap