chr12 : 5,391,547 – 5,392,219
672 bp 61 TFs 1 linked gene
This 672 bp open chromatin element is linked to ENSG00000256417 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000256417 101.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:5,386,547 – 5,397,219
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP endometrial-stromal-cell GSE119432.AR.endometrial-stromal-cell 155 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 337 bp overlap
ATF2 3 datasets
ChIP HEK293 ENCFF194VKZ 385 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 308 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 211 bp overlap
ATF3 3 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 243 bp overlap
ChIP K-562 ENCSR632DCH.ATF3.K-562 316 bp overlap
ChIP K562 ENCFF921JQW 593 bp overlap
BRD4 3 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 247 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 251 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 240 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 284 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 233 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 247 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 249 bp overlap
FOXA1 6 datasets
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 248 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 235 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 151 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 180 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 136 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 397 bp overlap
FOXA2 5 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 259 bp overlap
ChIP DE DE-FOXA2-1 672 bp overlap
ChIP DE DE-FOXA2-2 672 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 285 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 555 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXL2 1 dataset
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 266 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
GATA2 6 datasets
ChIP ESF GSE108408.GATA2.ESF 570 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 293 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 402 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 458 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 605 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 520 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 481 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 185 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 640 bp overlap
ChIP DE DE-GATA4-2 672 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 606 bp overlap
ChIP foregut GSE117136.GATA4.foregut 563 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 632 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 654 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 222 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 122 bp overlap
ChIP DE DE-GATA6-1 672 bp overlap
ChIP DE DE-GATA6-2 672 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 388 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 326 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 512 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 460 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 609 bp overlap
ChIP foregut GSE117136.GATA6.foregut 425 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 557 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 308 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 595 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 198 bp overlap
HNF1A 1 dataset
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 476 bp overlap
HSF1 2 datasets
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 127 bp overlap
ChIP U2OS_HEAT GSE60984.HSF1.U2OS_HEAT 194 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 256 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 389 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 367 bp overlap
MED1 2 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 233 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 464 bp overlap
MED12 2 datasets
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 139 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 127 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 367 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 252 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 303 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 300 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 400 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 300 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 420 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 345 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 145 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 416 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 437 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 444 bp overlap
PGR 1 dataset
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 128 bp overlap
PGR_B 1 dataset
ChIP hESC GSE62475.PGR_B.hESC 260 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 111 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 399 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 218 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 672 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 455 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 501 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 356 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 402 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 309 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 542 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 597 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 376 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 437 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 235 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 258 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 215 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 363 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 257 bp overlap
SRF 4 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 301 bp overlap
ChIP K562 ENCFF766EOO 397 bp overlap
ChIP MCF-7 ENCFF508RYE 397 bp overlap
ChIP MCF-7 ENCSR000BVA.SRF.MCF-7 229 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 166 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap
VDR 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 184 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 268 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 445 bp overlap
ZBTB21 1 dataset
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 214 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZNF214 1 dataset
Motif DE_72h DE_72h-ZNF214_MA1975.2 13 bp overlap
ZNF341 1 dataset
Motif DE_72h DE_72h-ZNF341_MA1655.2 8 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 486 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 309 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 138 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 509 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 368 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 184 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 244 bp overlap
ZNF770 1 dataset
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 452 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 335 bp overlap
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