chr11 : 125,330,306 125,331,087
781 bp 104 TFs 7 linked genes
This 781 bp open chromatin element is linked to 7 target genes and is bound by 104 transcription factors.
Linked Genes
7 genes
Link type
Gene Expression Dist. to TSS Distance Link type
PKNOX2 166.1 kb Distal Multiome
TMEM218 219.2 kb Distal Multiome
EI24 238.7 kb Distal Multiome
FEZ1 261.8 kb Distal Multiome
STT3A 262.1 kb Distal Multiome
CHEK1 295.2 kb Distal Multiome
CCDC15 376.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:125,325,306 – 125,336,087
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_36h DE_36h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_36h DE_36h-ARGFX_MA1463.2 8 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 272 bp overlap
CBFB 1 dataset
ChIP SKNO-1 GSE23730.CBFB.SKNO-1 214 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 169 bp overlap
CREM 1 dataset
Motif DE_36h DE_36h-CREM_MA0609.3 10 bp overlap
CTCFL 1 dataset
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 330 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF460KDD 158 bp overlap
DRGX 1 dataset
Motif DE_36h DE_36h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_36h DE_36h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_36h DE_36h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_36h DE_36h-EN1_MA0027.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 494 bp overlap
ESX1 1 dataset
Motif DE_36h DE_36h-ESX1_MA0644.3 7 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 526 bp overlap
EVX1 1 dataset
Motif DE_36h DE_36h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_36h DE_36h-EVX2_MA0888.2 6 bp overlap
EZH2 4 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 68 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 267 bp overlap
ChIP HeLa-S3 ENCFF318LHU 187 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 130 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 379 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 404 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 422 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 285 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 772 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 441 bp overlap
GSX1 1 dataset
Motif DE_36h DE_36h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_36h DE_36h-GSX2_MA0893.3 7 bp overlap
HMBOX1 2 datasets
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
HOXA1 1 dataset
Motif DE_36h DE_36h-HOXA1_MA1495.2 6 bp overlap
HOXA10 1 dataset
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
HOXA2 1 dataset
Motif DE_36h DE_36h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_36h DE_36h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_36h DE_36h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_36h DE_36h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_36h DE_36h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_36h DE_36h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_36h DE_36h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
IKZF2 2 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
ISX 1 dataset
Motif DE_36h DE_36h-ISX_MA0654.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 310 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 306 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 408 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 218 bp overlap
LHX5 1 dataset
Motif DE_36h DE_36h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
LMX1A 1 dataset
Motif DE_36h DE_36h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_36h DE_36h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif DE_36h DE_36h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_36h DE_36h-Lhx8_MA0705.2 6 bp overlap
MAX 1 dataset
ChIP melanocyte GSE115845.MAX.melanocyte 186 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif DE_36h DE_36h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_36h DE_36h-MEOX2_MA0706.2 7 bp overlap
MGA::EVX1 2 datasets
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
MIXL1 1 dataset
Motif DE_36h DE_36h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_36h DE_36h-MNX1_MA0707.3 6 bp overlap
NKX6-1 1 dataset
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_36h DE_36h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_36h DE_36h-NOTO_MA0710.2 7 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 411 bp overlap
PDX1 1 dataset
Motif DE_36h DE_36h-PDX1_MA0132.3 6 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 186 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 500 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 781 bp overlap
POU6F1 1 dataset
Motif DE_36h DE_36h-POU6F1_MA0628.2 6 bp overlap
PRRX1 1 dataset
Motif DE_36h DE_36h-PRRX1_MA0716.2 6 bp overlap
RAX2 1 dataset
Motif DE_36h DE_36h-RAX2_MA0717.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 192 bp overlap
SHOX 1 dataset
Motif DE_36h DE_36h-SHOX_MA0630.2 6 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 571 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 385 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 200 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 314 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 446 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 457 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 360 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 179 bp overlap
Shox2 1 dataset
Motif DE_36h DE_36h-Shox2_MA0720.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 320 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 417 bp overlap
TBX2 2 datasets
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX21 2 datasets
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 109 bp overlap
TLX2 1 dataset
Motif DE_36h DE_36h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_36h DE_36h-UNCX_MA0721.2 6 bp overlap
USF1 3 datasets
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 164 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
VAX1 1 dataset
Motif DE_36h DE_36h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_36h DE_36h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_36h DE_36h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_36h DE_36h-VSX2_MA0726.2 7 bp overlap
YBX1 1 dataset
ChIP HEL GSE146717.YBX1.HEL 274 bp overlap
ZKSCAN3 1 dataset
Motif DE_36h DE_36h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF213 3 datasets
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF701 1 dataset
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Zfx 2 datasets
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
mix-a 1 dataset
Motif DE_36h DE_36h-mix-a_MA0621.2 7 bp overlap