chr11 : 60,918,351 – 60,918,949
598 bp 62 TFs 3 linked genes
This 598 bp open chromatin element is linked to TMEM109, TMEM109-DT, and TMEM132A and is bound by 62 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TMEM109 4.2 kb Proximal Proximity
TMEM109-DT 4.3 kb Proximal Proximity
TMEM132A 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:60,913,351 – 60,923,949
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 589 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 202 bp overlap
ATF2 1 dataset
ChIP K-562 ENCSR869IUD.ATF2.K-562 248 bp overlap
ATF3 2 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 329 bp overlap
ChIP K562 ENCFF604FPV 338 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 288 bp overlap
ChIP K562 ENCFF308SKS 377 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 107 bp overlap
BRD4 1 dataset
ChIP keratinocyte GSE140992.BRD4.keratinocyte 200 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 254 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 143 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 252 bp overlap
CTCF 1 dataset
ChIP OCI-LY7 ENCFF086AXQ 103 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 340 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 430 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 233 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 66 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 55 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 77 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 66 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 90 bp overlap
GATA2 1 dataset
ChIP endothelial cell of umbilical vein ENCFF148NLK 331 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 598 bp overlap
ChIP DE DE-GATA4-2 598 bp overlap
ChIP foregut GSE117136.GATA4.foregut 470 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 331 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 598 bp overlap
ChIP DE DE-GATA6-2 598 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 439 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 598 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 509 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 598 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 598 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 529 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 598 bp overlap
ChIP foregut GSE117136.GATA6.foregut 490 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 422 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 338 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 274 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 373 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 301 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 220 bp overlap
HSF1 2 datasets
ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 137 bp overlap
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 111 bp overlap
JUN 10 datasets
ChIP 786-O GSE86092.JUN.786-O 147 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 389 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 598 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 598 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 336 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 573 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 98 bp overlap
ChIP K562 ENCFF455LLS 221 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 240 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 255 bp overlap
JUNB 3 datasets
ChIP K-562 ENCSR000DJY.JUNB.K-562 233 bp overlap
ChIP K562 ENCFF388SEP 329 bp overlap
ChIP K562 ENCFF388SEP 53 bp overlap
JUND 4 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 169 bp overlap
ChIP K562 ENCFF336RCR 359 bp overlap
ChIP K562 ENCFF336RCR 157 bp overlap
ChIP K562 ENCFF830LVJ 270 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 100 bp overlap
KLF1 1 dataset
ChIP HEK293 GSE76494.KLF1.HEK293 135 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 288 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 178 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 88 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 312 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 166 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 225 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 379 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 366 bp overlap
ChIP K562 ENCFF740YLK 123 bp overlap
RBPJ 3 datasets
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 67 bp overlap
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 129 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 257 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 598 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 508 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 574 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 202 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 205 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 125 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 137 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 166 bp overlap
SMARCC1 1 dataset
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 109 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 261 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 143 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 225 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 217 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 61 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 173 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 85 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 96 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 150 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 199 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 309 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 288 bp overlap
ZFP37 2 datasets
ChIP HEK293 ENCFF968PWB 148 bp overlap
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 126 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 310 bp overlap
ZNF148 3 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 304 bp overlap
ChIP K-562 GSE121133.ZNF148.K-562 170 bp overlap
ChIP K562 ENCFF352SDL 456 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 411 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 415 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 189 bp overlap
ZNF558 2 datasets
ChIP HEK293 ENCFF994JWH 306 bp overlap
ChIP HEK293 ENCSR447ZTA.ZNF558.HEK293 248 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 228 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 372 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 195 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 307 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 71 bp overlap
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