chr11 : 57,900,414 – 57,900,973

559 bp 83 TFs 0 linked genes

This 559 bp open chromatin element has no linked target genes and is bound by 83 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

83 transcription factors

ARID1A 1 dataset

ChIP RMG-I GSE104545.ARID1A.RMG-I 194 bp overlap

BCL6B 1 dataset

Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap

BRD4 2 datasets

ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 185 bp overlap

ChIP keratinocyte GSE140992.BRD4.keratinocyte 559 bp overlap

CDX2 4 datasets

ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 278 bp overlap

ChIP LS180 GSE31939.CDX2.LS180 352 bp overlap

ChIP LS180_125 GSE31939.CDX2.LS180_125 408 bp overlap

ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 401 bp overlap

CEBPA 1 dataset

Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap

CEBPG 1 dataset

Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap

CHD4 1 dataset

ChIP HaCaT GSE139685.CHD4.HaCaT 169 bp overlap

CREBBP 1 dataset

ChIP keratinocyte GSE140991.CREBBP.keratinocyte 346 bp overlap

DMRT3 1 dataset

Motif DE_60h DE_60h-DMRT3_MA0610.2 7 bp overlap

DMRTA1 1 dataset

Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap

DMRTC2 1 dataset

Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap

EHF 1 dataset

ChIP RWPE-1 GSE114241.EHF.RWPE-1 215 bp overlap

ELF1 1 dataset

ChIP K-562 ENCSR000BMD.ELF1.K-562 117 bp overlap

ELF3 3 datasets

ChIP PDAC GSE64557.ELF3.PDAC 287 bp overlap

ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 242 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 453 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 286 bp overlap

ERG 2 datasets

ChIP VCaP GSE49091.ERG.VCaP 141 bp overlap

ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 199 bp overlap

FOS 2 datasets

ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 227 bp overlap

ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 157 bp overlap

FOXA1 12 datasets

ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 373 bp overlap

ChIP LS180 GSE140533.FOXA1.LS180 170 bp overlap

ChIP LS180 GSE140533.FOXA1.LS180 85 bp overlap

ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 103 bp overlap

ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 284 bp overlap

ChIP PDAC GSE64557.FOXA1.PDAC 317 bp overlap

ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 314 bp overlap

ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 255 bp overlap

ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 222 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 270 bp overlap

ChIP ZR751 GSE72249.FOXA1.ZR751 190 bp overlap

ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 249 bp overlap

FOXA2 4 datasets

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 283 bp overlap

ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 368 bp overlap

ChIP DE DE-FOXA2-1 501 bp overlap

ChIP DE DE-FOXA2-2 515 bp overlap

GATA2 1 dataset

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 559 bp overlap

ChIP DE DE-GATA4-2 559 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 559 bp overlap

ChIP DE DE-GATA6-2 559 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 499 bp overlap

ChIP ESO-26 GSE132680.GATA6.ESO-26 438 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 477 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

HNF4A 3 datasets

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 167 bp overlap

ChIP IM95 GSE114018.HNF4A.IM95 334 bp overlap

ChIP KATO-III GSE114018.HNF4A.KATO-III 334 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 231 bp overlap

KDM1A 1 dataset

ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 362 bp overlap

KLF3 1 dataset

ChIP keratinocyte GSE140991.KLF3.keratinocyte 275 bp overlap

KLF4 1 dataset

ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 158 bp overlap

KLF5 1 dataset

ChIP ESO-26 GSE132680.KLF5.ESO-26 349 bp overlap

L3MBTL2 1 dataset

ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 309 bp overlap

MAML1 1 dataset

ChIP SCC_4h GSE156486.MAML1.SCC_4h 281 bp overlap

MAX 1 dataset

ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 253 bp overlap

MAZ 1 dataset

Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap

MEIS2 2 datasets

ChIP K-562 ENCSR851BNE.MEIS2.K-562 330 bp overlap

ChIP K562 ENCFF320GSD 341 bp overlap

NCOR1 2 datasets

ChIP LS180 GSE39277.NCOR1.LS180 198 bp overlap

ChIP LS180_125 GSE39277.NCOR1.LS180_125 177 bp overlap

NCOR2 1 dataset

ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap

NFKB1 1 dataset

ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 170 bp overlap

NIPBL 1 dataset

ChIP GP5D GSE51234.NIPBL.GP5D 351 bp overlap

NKX2-1 2 datasets

ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 333 bp overlap

ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 341 bp overlap

NKX2-3 1 dataset

Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap

NRF1 1 dataset

ChIP HCC1954 GSE67867.NRF1.HCC1954 118 bp overlap

Nkx2-1 1 dataset

Motif DE_60h DE_60h-Nkx2-1_MA1994.2 7 bp overlap

PBX2 2 datasets

ChIP K-562 ENCSR263DFP.PBX2.K-562 253 bp overlap

ChIP K562 ENCFF286KMN 396 bp overlap

PGR 1 dataset

Motif DE_60h DE_60h-PGR_MA2327.1 9 bp overlap

PKNOX1 1 dataset

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 220 bp overlap

POLR2A 1 dataset

ChIP transverse colon ENCFF610RWV 254 bp overlap

PROX1 1 dataset

ChIP SW480 GSE60390.PROX1.SW480 190 bp overlap

RAD21 1 dataset

ChIP GP5D GSE51234.RAD21.GP5D 248 bp overlap

RBPJ 2 datasets

ChIP SCC_0h GSE156486.RBPJ.SCC_0h 213 bp overlap

ChIP SCC_4h GSE156486.RBPJ.SCC_4h 302 bp overlap

RELA 2 datasets

ChIP 786-O GSE86092.RELA.786-O 181 bp overlap

ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 288 bp overlap

REST 3 datasets

ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 559 bp overlap

ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 89 bp overlap

ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 490 bp overlap

RFX1 2 datasets

ChIP K-562 ENCSR968GIB.RFX1.K-562 298 bp overlap

ChIP K562 ENCFF809XVG 386 bp overlap

RXR 1 dataset

ChIP LS180 GSE31939.RXR.LS180 128 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 134 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 559 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 453 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 438 bp overlap

SMAD3 3 datasets

ChIP HCC1954 GSE104760.SMAD3.HCC1954 402 bp overlap

ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 328 bp overlap

ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 103 bp overlap

SMAD4 1 dataset

ChIP Caco-2 GSE112946.SMAD4.Caco-2 247 bp overlap

SMC1A 1 dataset

ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 223 bp overlap

SOX13 1 dataset

Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 357 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 416 bp overlap

SOX2 1 dataset

Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap

SPDEF 1 dataset

ChIP A-549 GSE86957.SPDEF.A-549 232 bp overlap

SRF 1 dataset

ChIP K-562 ENCSR582IAO.SRF.K-562 129 bp overlap

STAG1 1 dataset

ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 92 bp overlap

STAT3 6 datasets

ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 255 bp overlap

ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 295 bp overlap

ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 263 bp overlap

ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 176 bp overlap

ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 230 bp overlap

ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 147 bp overlap

Six3 2 datasets

Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap

Sox3 1 dataset

Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap

TCF4 1 dataset

ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap

TFAP2C 1 dataset

ChIP HCC1954 GSE126897.TFAP2C.HCC1954 191 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

ZBTB32 1 dataset

Motif DE_60h DE_60h-ZBTB32_MA1580.1 10 bp overlap

ZBTB7C 1 dataset

Motif DE_60h DE_60h-ZBTB7C_MA0695.2 8 bp overlap

ZNF148 1 dataset

Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap

ZNF213 1 dataset

Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap

ZNF565 1 dataset

ChIP HEK293T GSE78099.ZNF565.HEK293T 122 bp overlap

ZNF592 1 dataset

ChIP K-562 ENCSR249BHQ.ZNF592.K-562 317 bp overlap

ZNF816 1 dataset

Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap

ZNF85 1 dataset

Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap