chr11 : 16,603,261 – 16,603,722
461 bp 56 TFs 1 linked gene
This 461 bp open chromatin element is linked to SOX6 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX6 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:16,598,261 – 16,608,722
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 138 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 160 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 307 bp overlap
BRD3 4 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 399 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 410 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 373 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 461 bp overlap
BRD4 5 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 447 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 142 bp overlap
ChIP K-562_iBET-BD1 GSE138084.BRD4.K-562_iBET-BD1 338 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 322 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 447 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 236 bp overlap
CHAMP1 1 dataset
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 283 bp overlap
CTCF 128 datasets
ChIP GM23338 ENCFF772DML 137 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 75 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 75 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 162 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 123 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 94 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 99 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 154 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 90 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 187 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 140 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 159 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 129 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 284 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 341 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 273 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 226 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 244 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 213 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 185 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 177 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 192 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 458 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 232 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 242 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 258 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 435 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 142 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 190 bp overlap
ChIP K-562_sgGal4 GSE132212.CTCF.K-562_sgGal4 257 bp overlap
ChIP K562 ENCFF082GOI 104 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF400DFR 93 bp overlap
ChIP K562 ENCFF430KTH 398 bp overlap
ChIP K562 ENCFF598YSU 271 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 115 bp overlap
ChIP MCF-7_fulvestrant-resistant GSE118711.CTCF.MCF-7_fulvestrant-resistant 211 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 294 bp overlap
ChIP Peyer's patch ENCFF701KWW 351 bp overlap
ChIP Peyer's patch ENCFF746TCR 173 bp overlap
ChIP Peyer's patch ENCFF828IDE 337 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 350 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 304 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 224 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 350 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 147 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 136 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 256 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 237 bp overlap
ChIP chondrocyte ENCFF134ORZ 383 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 290 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 261 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 272 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 314 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 408 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 441 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 295 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 443 bp overlap
ChIP endodermal cell ENCFF471YCZ 420 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 138 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 330 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 233 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 397 bp overlap
ChIP esophagus squamous epithelium ENCFF683HYK 351 bp overlap
ChIP esophagus squamous epithelium ENCFF797YPG 414 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 197 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 352 bp overlap
ChIP esophagus_squamous-epithelium ENCSR773JBP.CTCF.esophagus_squamous-epithelium 263 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 197 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 320 bp overlap
ChIP gastrocnemius medialis ENCFF071DIF 255 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 420 bp overlap
ChIP gastrocnemius medialis ENCFF410RHW 460 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 311 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 273 bp overlap
ChIP heart left ventricle ENCFF185CKY 411 bp overlap
ChIP heart left ventricle ENCFF244ZHV 395 bp overlap
ChIP heart left ventricle ENCFF354HOQ 220 bp overlap
ChIP heart left ventricle ENCFF440XFJ 368 bp overlap
ChIP heart left ventricle ENCFF548XHH 381 bp overlap
ChIP heart left ventricle ENCFF575JEQ 457 bp overlap
ChIP heart left ventricle ENCFF842XRG 411 bp overlap
ChIP heart left ventricle ENCFF888ERQ 426 bp overlap
ChIP heart left ventricle ENCFF888ERQ 304 bp overlap
ChIP heart left ventricle ENCFF987PUT 371 bp overlap
ChIP heart right ventricle ENCFF027ORH 248 bp overlap
ChIP heart right ventricle ENCFF435TKW 204 bp overlap
ChIP heart right ventricle ENCFF577TID 193 bp overlap
ChIP heart right ventricle ENCFF725NNJ 420 bp overlap
ChIP heart right ventricle ENCFF767XJQ 431 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 333 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 313 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 202 bp overlap
ChIP hepatocyte ENCFF263BLJ 345 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 231 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 106 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 168 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 200 bp overlap
ChIP islet ERP004003.CTCF.islet 248 bp overlap
ChIP keratinocyte ENCFF046PBT 110 bp overlap
ChIP keratinocyte ENCFF291YDC 105 bp overlap
ChIP keratinocyte ENCFF667ULX 325 bp overlap
ChIP keratinocyte ENCFF805QIE 361 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 461 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 282 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 280 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 320 bp overlap
ChIP kidney ENCFF335EKK 185 bp overlap
ChIP kidney ENCSR000DMC.CTCF.kidney 110 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 429 bp overlap
ChIP neural crest cell ENCFF182LWK 397 bp overlap
ChIP neural crest cell ENCFF182LWK 333 bp overlap
ChIP neural progenitor cell ENCFF420RBO 168 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 251 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 179 bp overlap
ChIP osteocyte ENCFF929FPD 207 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 225 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 337 bp overlap
ChIP psoas muscle ENCFF305ZVF 405 bp overlap
ChIP right atrium auricular region ENCFF696NTN 217 bp overlap
ChIP testis ENCSR981CID.CTCF.testis 158 bp overlap
E2F4 1 dataset
ChIP K-562 ENCSR000EWL.E2F4.K-562 207 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 246 bp overlap
EZH2 8 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 361 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 266 bp overlap
ChIP H1 ENCFF232NZA 461 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 367 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 340 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 268 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 412 bp overlap
ChIP neural progenitor cell ENCFF472NFV 110 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 186 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 408 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 254 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 337 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 157 bp overlap
ChIP K562 ENCFF744ALD 421 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 461 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 403 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 322 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 309 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 194 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 279 bp overlap
ChIP K562 ENCFF771OHZ 190 bp overlap
JARID2 1 dataset
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 299 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 308 bp overlap
ChIP K562 ENCFF128TYE 459 bp overlap
ChIP K562 ENCFF133OLU 426 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 220 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 151 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 171 bp overlap
MAZ 2 datasets
ChIP K-562 ENCSR000EFX.MAZ.K-562 229 bp overlap
ChIP K562 ENCFF333ZIV 371 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 103 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 263 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 18 datasets
ChIP H1 ENCFF698EWO 95 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.RAD21.HEC-1-B_F-insertion 166 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.RAD21.HEC-1-B_FFRR-insertion 63 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 127 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 208 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 135 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 179 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 250 bp overlap
ChIP K562 ENCFF169SQI 86 bp overlap
ChIP K562 ENCFF634XYR 334 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 157 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 267 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 428 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 296 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 227 bp overlap
ChIP hiPSC_IB7 GSE106870.RAD21.hiPSC_IB7 171 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP K-562 ENCSR000EGC.RCOR1.K-562 153 bp overlap
REST 2 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 301 bp overlap
ChIP K562 ENCFF688UKW 337 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 273 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 163 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 148 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 288 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 139 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 238 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 461 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 328 bp overlap
SP1 1 dataset
ChIP K562 ENCFF088XXV 461 bp overlap
STAG1 5 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 279 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF843EBZ 76 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 223 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 188 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 461 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 222 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 300 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 103 bp overlap
XRCC5 2 datasets
ChIP HepG2 ENCFF330PDO 150 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 188 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 402 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 133 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 241 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 316 bp overlap
ZFY 1 dataset
ChIP HepG2 ENCFF106ELT 121 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 180 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 128 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 244 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
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