chr9 : 107,491,441 – 107,491,630
189 bp 58 TFs 2 linked genes
This 189 bp open chromatin element is linked to KLF4 and ENSG00000289987 and is bound by 58 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KLF4 1.7 kb Proximal Proximity
ENSG00000289987 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:107,486,441 – 107,496,630
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 155 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 178 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 189 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 189 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 189 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 189 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 189 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 189 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 50 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 189 bp overlap
BRD4 9 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 189 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 83 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 189 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 105 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 189 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 64 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 64 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 135 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 126 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 144 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 164 bp overlap
CTCF 1 dataset
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 185 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 116 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 189 bp overlap
ESR1 1 dataset
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 145 bp overlap
EZH2 11 datasets
ChIP GM23338 ENCFF613YON 149 bp overlap
ChIP H1 ENCFF232NZA 183 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 189 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 189 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 189 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 189 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 181 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 189 bp overlap
ChIP neural progenitor cell ENCFF018MKA 189 bp overlap
ChIP neural progenitor cell ENCFF018MKA 189 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 71 bp overlap
FOXA1 22 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 189 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 145 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 189 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 127 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 189 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 100 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 180 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 153 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 189 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 189 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 189 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 189 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 189 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 189 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 189 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 82 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 53 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 189 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 189 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 189 bp overlap
ChIP liver ERP002306.FOXA1.liver 124 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 148 bp overlap
FOXA2 11 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 189 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 189 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 189 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 189 bp overlap
ChIP DE DE-FOXA2-1 189 bp overlap
ChIP DE DE-FOXA2-2 189 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 119 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 189 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 189 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 148 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 160 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 151 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 128 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 133 bp overlap
HIF1A 1 dataset
ChIP HUVEC-C_HYPOX GSE39089.HIF1A.HUVEC-C_HYPOX 166 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 189 bp overlap
JARID2 4 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 189 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 189 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 189 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 188 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 165 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 161 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 133 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 189 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 189 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 169 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 189 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 111 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 189 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 87 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 189 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 189 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 109 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 108 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 189 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 107 bp overlap
POLR2A 5 datasets
ChIP esophagus muscularis mucosa ENCFF432ZCY 176 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 118 bp overlap
ChIP prostate gland ENCFF881OMH 185 bp overlap
ChIP thyroid gland ENCFF979LRR 100 bp overlap
ChIP thyroid gland ENCFF979LRR 189 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 189 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 140 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 189 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 189 bp overlap
RELA 1 dataset
ChIP HUVEC-C GSE121890.RELA.HUVEC-C 189 bp overlap
RNF2 4 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 145 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 92 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 189 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 189 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 139 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 189 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 173 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 79 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 189 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 147 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 189 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 114 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 127 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 189 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 189 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 131 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 189 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 89 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 71 bp overlap
TEAD4 5 datasets
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 58 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 168 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 170 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 189 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 189 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 77 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 189 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 114 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 189 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 175 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 53 bp overlap
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