chr1 : 18,722,251 18,722,870
619 bp 86 TFs 2 linked genes
This 619 bp open chromatin element is linked to PAX7 and ALDH4A1 and is bound by 86 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PAX7 91.0 kb Distal Multiome
ALDH4A1 180.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:18,717,251 – 18,727,870
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 251 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 174 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 239 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 103 bp overlap
BRD4 5 datasets
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 215 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 306 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 619 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 258 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 254 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 254 bp overlap
CTCF 3 datasets
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 392 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 246 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 516 bp overlap
Crx 2 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
ERF::FOXI1 2 datasets
Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 2 datasets
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_72h DE_72h-ERFFOXO1_MA1936.2 12 bp overlap
ESR1 14 datasets
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 252 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 340 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 336 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 164 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 152 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 340 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 336 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 209 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 207 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 207 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 160 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 160 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 257 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 180 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 181 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 146 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_72h DE_72h-ETV5FOXI1_MA1946.2 12 bp overlap
EZH2 7 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 237 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 179 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 555 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 78 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 200 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 360 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 287 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 6 datasets
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 237 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 264 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 247 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 318 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 329 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 226 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 619 bp overlap
ChIP DE DE-FOXA2-2 619 bp overlap
FOXC1 2 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 2 datasets
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 2 datasets
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXE1 2 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXH1 2 datasets
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXN3 4 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
Foxn1 2 datasets
Motif DE_48h DE_48h-Foxn1_MA1684.1 6 bp overlap
Motif DE_72h DE_72h-Foxn1_MA1684.1 6 bp overlap
GATA1 2 datasets
ChIP K-562 ENCSR000EWM.GATA1.K-562 153 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 205 bp overlap
GATA2 7 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 183 bp overlap
ChIP K562 ENCFF513FTZ 225 bp overlap
ChIP SH-SY5Y ENCFF485YIB 285 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 331 bp overlap
ChIP SK-N-SH ENCFF764OZD 314 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 277 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 272 bp overlap
GATA3 15 datasets
ChIP BE2C GSE65664.GATA3.BE2C 241 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 316 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 287 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 287 bp overlap
ChIP MCF-7 ENCFF352QVM 353 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 168 bp overlap
ChIP MCF-7 GSE117492.GATA3.MCF-7 239 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 318 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 254 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 155 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 238 bp overlap
ChIP NGP GSE65664.GATA3.NGP 158 bp overlap
ChIP SH-SY5Y ENCFF475HYF 370 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 337 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 197 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 235 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 220 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 477 bp overlap
ChIP DE DE-GATA4-2 573 bp overlap
ChIP foregut GSE117136.GATA4.foregut 427 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 349 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 410 bp overlap
ChIP DE DE-GATA6-2 536 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 358 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 476 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 456 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 452 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 502 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 435 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 619 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
GLIS2 1 dataset
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
GSC 2 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 458 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 547 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 392 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 215 bp overlap
ISL2 2 datasets
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 151 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 381 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 478 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 531 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NFKB1 1 dataset
Motif DE_72h DE_72h-NFKB1_MA0105.4 13 bp overlap
NKX2-3 2 datasets
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-3_MA0672.2 8 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 304 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 225 bp overlap
Nkx3-1 2 datasets
Motif DE_48h DE_48h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_72h DE_72h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 2 datasets
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_72h DE_72h-Nkx3-2_MA0122.4 10 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 324 bp overlap
PHOX2A 2 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 283 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 2 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 3 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 619 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 136 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
RELA 1 dataset
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 300 bp overlap
RHOXF1 2 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 263 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 204 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 579 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 447 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 407 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 470 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 430 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 414 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 219 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 190 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 447 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 381 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 277 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 405 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 534 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 242 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 253 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 210 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 220 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 390 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF7L1 2 datasets
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 260 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 283 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 320 bp overlap
TFAP2C 3 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 107 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 250 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 269 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 120 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 109 bp overlap
ZNF16 1 dataset
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF354C 2 datasets
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap