chr9 : 77,128,274 77,128,777
503 bp 81 TFs 2 linked genes
This 503 bp open chromatin element is linked to VPS13A and PRUNE2 and is bound by 81 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
VPS13A 48.9 kb Distal Multiome
PRUNE2 222.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:77,123,274 – 77,133,777
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP H1 ENCFF295GZO 477 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 232 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 164 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 201 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 165 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 184 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 269 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 240 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 480 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 269 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
CTNNB1 2 datasets
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 292 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 298 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 393 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 135 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 289 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 154 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 342 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 367 bp overlap
EZH2 1 dataset
ChIP hESC GSE113817.EZH2.hESC 241 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 266 bp overlap
ChIP WTC11 ENCFF338WGC 476 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 364 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 350 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 219 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 287 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 225 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 258 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 306 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 184 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 385 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 352 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 250 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 275 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 164 bp overlap
ChIP H1 ENCFF747ZPQ 126 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 503 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 367 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 268 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 405 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 323 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 262 bp overlap
ChIP hESC GSE20650.NANOG.hESC 188 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCFF029AAD 281 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 205 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 192 bp overlap
ChIP GM23338 ENCFF333SNB 280 bp overlap
ChIP H1 ENCFF698ZAP 179 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 503 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 137 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 393 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 237 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 206 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 245 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 125 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 235 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 280 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 371 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 295 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 269 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 236 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 403 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 503 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 366 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 439 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 295 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 252 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 361 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap
SP1 4 datasets
ChIP H1 ENCFF263FUH 288 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 262 bp overlap
ChIP WTC11 ENCFF688PEU 447 bp overlap
ChIP WTC11 ENCFF688PEU 247 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 174 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 288 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 223 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 348 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 347 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 330 bp overlap
ChIP H1 ENCFF778PAX 150 bp overlap
ChIP Ishikawa ENCFF772OTG 286 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 122 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 204 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 244 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 503 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 376 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 328 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 232 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 422 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 126 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF114 3 datasets
ChIP GM23338 ENCFF631OSW 357 bp overlap
ChIP GM23338 ENCFF631OSW 279 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 311 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 185 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 498 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF585B 2 datasets
ChIP HEK293 ENCFF657XIZ 367 bp overlap
ChIP HEK293 ENCSR011XCI.ZNF585B.HEK293 268 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN18 2 datasets
ChIP WTC11 ENCFF867QWX 257 bp overlap
ChIP WTC11 ENCFF867QWX 169 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap