chr9 : 1,045,246 1,045,924
678 bp 77 TFs 3 linked genes
This 678 bp open chromatin element is linked to LINC01230, ENSG00000286684, and DMRT2 and is bound by 77 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
LINC01230 at TSS At TSS Proximity
ENSG00000286684 2.6 kb Proximal Proximity
DMRT2 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:1,040,246 – 1,050,924
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 397 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 346 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 256 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 208 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 384 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 456 bp overlap
BRD2 4 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 662 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 612 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 580 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 645 bp overlap
BRD4 15 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 193 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 467 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 288 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 236 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 186 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 268 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 462 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 436 bp overlap
ChIP THP-1_iBET GSE138084.BRD4.THP-1_iBET 488 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD4.THP-1_iBET-BD1 212 bp overlap
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD4.THP-1_iBET-BD1-PMA 302 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 521 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 416 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 390 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 425 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 220 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 166 bp overlap
CEBPA 7 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 220 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 282 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 234 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 334 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 257 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 288 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 287 bp overlap
CEBPB 7 datasets
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 101 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 292 bp overlap
ChIP THP-1_NS1-Pam3csk-0h GSE103477.CEBPB.THP-1_NS1-Pam3csk-0h 219 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 311 bp overlap
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-0h 314 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 360 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 196 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 222 bp overlap
CTCF 13 datasets
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 149 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 320 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 162 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 224 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 234 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 220 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 451 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 256 bp overlap
ChIP neural crest cell ENCFF182LWK 471 bp overlap
ChIP neural crest cell ENCFF182LWK 466 bp overlap
ChIP tibial nerve ENCFF857SLT 463 bp overlap
ChIP tibial nerve ENCFF857SLT 471 bp overlap
ChIP transverse colon ENCFF749DPF 474 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 290 bp overlap
ChIP BLaER1 ENCFF262VBH 446 bp overlap
ChIP BLaER1 ENCFF274GAT 354 bp overlap
ChIP BLaER1 ENCFF364PUR 473 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 426 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 342 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 356 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 338 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 160 bp overlap
EZH2 17 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 559 bp overlap
ChIP GM23338 ENCFF613YON 616 bp overlap
ChIP GM23338 ENCFF886DXX 238 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 491 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 253 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 535 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 198 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 404 bp overlap
ChIP astrocyte ENCFF365JTP 291 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 498 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 459 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 389 bp overlap
ChIP hESC GSE113817.EZH2.hESC 412 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 252 bp overlap
ChIP keratinocyte ENCFF070STK 106 bp overlap
ChIP keratinocyte ENCFF070STK 359 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 202 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 289 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 325 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 355 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 553 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 636 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 494 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 468 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 265 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 220 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 467 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 368 bp overlap
KMT2A 2 datasets
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 318 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 323 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 328 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 308 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 265 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 315 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 356 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 447 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 605 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 334 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 636 bp overlap
POLR2A 13 datasets
ChIP breast epithelium ENCFF065JSZ 281 bp overlap
ChIP breast epithelium ENCFF960NNA 431 bp overlap
ChIP breast epithelium ENCFF960NNA 345 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 264 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 551 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 511 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 361 bp overlap
ChIP sigmoid colon ENCFF748YVT 445 bp overlap
ChIP sigmoid colon ENCFF754JQR 365 bp overlap
ChIP suprapubic skin ENCFF083NEJ 331 bp overlap
ChIP suprapubic skin ENCFF748PRQ 277 bp overlap
ChIP vagina ENCFF384GAB 566 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 678 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 445 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 528 bp overlap
PPARG 1 dataset
ChIP ASC GSE21366.PPARG.ASC 179 bp overlap
RAD21 4 datasets
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 270 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 222 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 328 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 310 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 226 bp overlap
RELA 2 datasets
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.RELA.THP-1_eGFP-Pam3csk-0h 366 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.RELA.THP-1_eGFP-Pam3csk-4h 275 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 441 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 388 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 273 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 151 bp overlap
RUNX1 2 datasets
ChIP NB4 GSE81992.RUNX1.NB4 244 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 260 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 643 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 485 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 229 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 359 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 82 bp overlap
STAG1 2 datasets
ChIP OCI-AML-3 GSE111537.STAG1.OCI-AML-3 365 bp overlap
ChIP OCI-AML-3_deltaSTAG2 GSE111537.STAG1.OCI-AML-3_deltaSTAG2 420 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 480 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 502 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 466 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 493 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 457 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 405 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 235 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 296 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 425 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 435 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 320 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 291 bp overlap
VDR 2 datasets
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 351 bp overlap
ChIP THP-1_EtOH_1d GSE89431.VDR.THP-1_EtOH_1d 163 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 480 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 511 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
ZSCAN21 2 datasets
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_24h DE_24h-ZSCAN21_MA2336.1 7 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap