chr8 : 96,159,549 – 96,160,042
493 bp 71 TFs 1 linked gene
This 493 bp open chromatin element is linked to GDF6 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GDF6 763 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:96,154,549 – 96,165,042
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP VCaP GSE92347.AR.VCaP 136 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 286 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 345 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 185 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 80 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 133 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 59 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 84 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 99 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 445 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 74 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 132 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 387 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 286 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 225 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 338 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 493 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 252 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 347 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 473 bp overlap
CTCF 1 dataset
ChIP keratinocyte GSE154221.CTCF.keratinocyte 175 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 481 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 493 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 321 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 90 bp overlap
ERG 4 datasets
ChIP MCF-7 GSE23730.ERG.MCF-7 268 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 202 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 201 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 66 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 316 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 450 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 304 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 304 bp overlap
EZH2 35 datasets
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 194 bp overlap
ChIP GM23248 ENCFF404ZHM 118 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 294 bp overlap
ChIP GM23338 ENCFF613YON 493 bp overlap
ChIP GM23338 ENCFF886DXX 60 bp overlap
ChIP GM23338 ENCFF886DXX 493 bp overlap
ChIP H1 ENCFF232NZA 493 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 493 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 87 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 103 bp overlap
ChIP KG-1_shPLZF GSE109619.EZH2.KG-1_shPLZF 180 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 337 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 493 bp overlap
ChIP astrocyte ENCFF365JTP 493 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 95 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 222 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 493 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 83 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 228 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 493 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 493 bp overlap
ChIP fibroblast of lung ENCFF479BAW 352 bp overlap
ChIP hESC GSE13084.EZH2.hESC 77 bp overlap
ChIP hESC GSE113817.EZH2.hESC 493 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 493 bp overlap
ChIP hepatocyte ENCFF118DKH 70 bp overlap
ChIP hepatocyte ENCFF552DZB 493 bp overlap
ChIP hepatocyte ENCFF552DZB 493 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 493 bp overlap
ChIP keratinocyte ENCFF070STK 493 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 493 bp overlap
ChIP neural progenitor cell ENCFF018MKA 493 bp overlap
ChIP neural progenitor cell ENCFF472NFV 493 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 101 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 225 bp overlap
EZH2_phosphoT487 4 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 135 bp overlap
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 309 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 184 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 80 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 232 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 324 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 493 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 493 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 365 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 316 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 222 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE83671.KMT2A.THP-1 449 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 332 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 360 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 75 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 493 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 323 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 112 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 184 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 206 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 339 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_1 GSE104399.NR3C1.breast_tumor_Male_1 278 bp overlap
OGG1 2 datasets
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 293 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 341 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 326 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 202 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 238 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 168 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 351 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 493 bp overlap
RBM39 1 dataset
ChIP HepG2 ENCFF084YZE 160 bp overlap
RELA 1 dataset
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 140 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 112 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 493 bp overlap
ChIP H1 ENCFF239FFS 493 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 176 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 177 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 236 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 488 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 469 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 255 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 141 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 141 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 326 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 455 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 461 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 144 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 493 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 288 bp overlap
SPI1 3 datasets
ChIP HL-60 ENCFF645GBT 145 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 70 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 158 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 381 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 387 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 231 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 152 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 214 bp overlap
SUZ12 11 datasets
ChIP GM12878 ENCFF498QAM 293 bp overlap
ChIP H1 ENCFF507HGF 262 bp overlap
ChIP H1 ENCFF881NFR 493 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 256 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 214 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 265 bp overlap
ChIP NT2/D1 ENCFF574SXS 405 bp overlap
ChIP NT2/D1 ENCFF574SXS 105 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SUZ12.SYO-1_shRING1A-B 450 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.SUZ12.hiPSC_WTa_RNase-neg 379 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 220 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 227 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 301 bp overlap
TP63 2 datasets
ChIP foreskin GSE126390.TP63.foreskin 288 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 172 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 196 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 339 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 171 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 357 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 204 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 487 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 137 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 85 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 81 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 57 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 202 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 139 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 380 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 86 bp overlap
Huangfu Lab · Publications · Resources · Contact