chr7 : 132,536,943 – 132,537,867
924 bp 66 TFs 1 linked gene
This 924 bp open chromatin element is linked to PLXNA4 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PLXNA4 39.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:132,531,943 – 132,542,867
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 100 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 312 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 260 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 724 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 394 bp overlap
BRD4 10 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 155 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 335 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 281 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 234 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 368 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 499 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 218 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 220 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 405 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 371 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EGR1 1 dataset
ChIP macrophage_D3 GSE136216.EGR1.macrophage_D3 314 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 205 bp overlap
ChIP SK-N-SH ENCFF871YHY 56 bp overlap
EP300 2 datasets
ChIP AML GSE131939.EP300.AML 192 bp overlap
ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 204 bp overlap
ERG 6 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 262 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 309 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 198 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 67 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 199 bp overlap
ESR1 4 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 317 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 340 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 413 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 168 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 245 bp overlap
ETV1 1 dataset
ChIP GIST882 GSE80443.ETV1.GIST882 215 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 279 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 151 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 98 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 96 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 67 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 626 bp overlap
ChIP DE DE-FOXA2-2 395 bp overlap
GATA2 3 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 157 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 275 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 246 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 96 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 872 bp overlap
ChIP DE DE-GATA4-2 746 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 520 bp overlap
ChIP DE DE-GATA6-2 732 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 361 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 198 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 455 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HNF4A 1 dataset
Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 321 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 199 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 326 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 212 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCFF285LXR 125 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 79 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 164 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 325 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PROX1 1 dataset
Motif DE_60h DE_60h-PROX1_MA0794.1 12 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 117 bp overlap
RELA 3 datasets
ChIP KB GSE52469.RELA.KB 103 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 59 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 61 bp overlap
REST 2 datasets
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 274 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX1T1 1 dataset
ChIP CD34 GSE80773.RUNX1T1.CD34 163 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 215 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 176 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 291 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 349 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 235 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 345 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 178 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 924 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 422 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 253 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 877 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 720 bp overlap
SMAD3-EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-EPAS1.PC-3_hypoxia 193 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 183 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 220 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 244 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 714 bp overlap
SPI1 9 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 353 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 166 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 247 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 137 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 182 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 242 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 193 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 220 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 213 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 182 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 146 bp overlap
STAT3 2 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 169 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 188 bp overlap
TAL1 1 dataset
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 225 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 271 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 338 bp overlap
ChIP SK-N-SH ENCFF147AHB 111 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 99 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 80 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 257 bp overlap
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