chr6 : 153,625,033 – 153,625,539

506 bp 65 TFs 0 linked genes

This 506 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

65 transcription factors

AFF1 1 dataset

ChIP L826 GSE83671.AFF1.L826 234 bp overlap

AR 2 datasets

ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 165 bp overlap

ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 186 bp overlap

BCL6 1 dataset

Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap

BCL6B 1 dataset

Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap

CDK8 1 dataset

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 127 bp overlap

CRY2 1 dataset

ChIP U2OS GSE130602.CRY2.U2OS 225 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

EBF1 1 dataset

ChIP ASC GSE54889.EBF1.ASC 174 bp overlap

EGR2 1 dataset

ChIP HEK293 ENCFF336LFH 425 bp overlap

ELF1 1 dataset

ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 375 bp overlap

ERG 2 datasets

ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 264 bp overlap

ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 159 bp overlap

ESR1 1 dataset

ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FLI1 4 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 309 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 245 bp overlap

ChIP A-673_D14 GSE129155.FLI1.A-673_D14 302 bp overlap

ChIP A-673_D17 GSE129155.FLI1.A-673_D17 362 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 335 bp overlap

GABPA 1 dataset

ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 126 bp overlap

GATA2 1 dataset

ChIP ESF GSE108408.GATA2.ESF 383 bp overlap

HOXD13 1 dataset

ChIP HEK293 ENCFF590OUV 341 bp overlap

Hic1 1 dataset

Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap

MED1 1 dataset

ChIP RH4 GSE83726.MED1.RH4 216 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 506 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 354 bp overlap

MYCN 2 datasets

ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 79 bp overlap

ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 340 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NFIB 1 dataset

Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap

NFIC 2 datasets

Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap

ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 144 bp overlap

NFIC::TLX1 1 dataset

Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 1 dataset

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

ONECUT1 5 datasets

ChIP H9 ERP004206.ONECUT1.H9 94 bp overlap

ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 79 bp overlap

ChIP HepG2 ENCFF243FIR 144 bp overlap

ChIP liver ERP002306.ONECUT1.liver 70 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 245 bp overlap

ONECUT2 1 dataset

ChIP A-549 GSE102599.ONECUT2.A-549 421 bp overlap

POLR2A 2 datasets

ChIP PFSK-1 ENCFF576NIT 442 bp overlap

ChIP SK-N-MC ENCFF088IVG 458 bp overlap

POU2F1 2 datasets

ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 428 bp overlap

ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 251 bp overlap

RBBP4 1 dataset

ChIP RH5 GSE155861.RBBP4.RH5 187 bp overlap

REL 1 dataset

Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap

RELA 3 datasets

Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap

ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 211 bp overlap

ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap

REST 1 dataset

ChIP PFSK1 ENCSR000BOX.REST.PFSK1 286 bp overlap

RUVBL2 1 dataset

ChIP U2OS GSE130602.RUVBL2.U2OS 403 bp overlap

SIN3A 2 datasets

ChIP PFSK-1 ENCFF218MAY 291 bp overlap

ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 296 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 333 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 104 bp overlap

SMARCA2 3 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 267 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 272 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 326 bp overlap

SMARCA4 4 datasets

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 288 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 365 bp overlap

ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 166 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 377 bp overlap

SMARCC1 3 datasets

ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 288 bp overlap

ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 237 bp overlap

ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 320 bp overlap

SOX2 1 dataset

ChIP RENVM GSE49404.SOX2.RENVM 138 bp overlap

SOX8 1 dataset

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap

SS18 1 dataset

ChIP Aska-SS GSE108025.SS18.Aska-SS 243 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

STAT3 7 datasets

ChIP HCC1187 GSE152203.STAT3.HCC1187 222 bp overlap

ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 338 bp overlap

ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 307 bp overlap

ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 215 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 332 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 348 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 191 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

TAF1 2 datasets

ChIP PFSK-1 ENCFF982LZL 405 bp overlap

ChIP PFSK1 ENCSR000BQN.TAF1.PFSK1 143 bp overlap

TCF7L2 1 dataset

ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 183 bp overlap

TEAD1 1 dataset

ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 177 bp overlap

TEAD4 2 datasets

ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 266 bp overlap

ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 235 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap

TRIM28 3 datasets

ChIP HEK293 ENCFF582MWI 497 bp overlap

ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 301 bp overlap

ChIP U2OS ENCSR000EYC.TRIM28.U2OS 328 bp overlap

TWIST1 1 dataset

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 151 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF182 1 dataset

ChIP HEK293T GSE78099.ZNF182.HEK293T 178 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap