chr6 : 105,990,155 105,990,516
361 bp 68 TFs 1 linked gene
This 361 bp open chromatin element is linked to PRDM1 and is bound by 68 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDM1 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:105,985,155 – 105,995,516
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 194 bp overlap
AR 31 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 228 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 155 bp overlap
ChIP LNCaP GSE43720.AR.LNCaP 231 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 234 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 175 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 233 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 186 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 263 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 224 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 247 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 222 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 299 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 240 bp overlap
ChIP VCaP GSE148358.AR.VCaP 163 bp overlap
ChIP VCaP GSE32892.AR.VCaP 130 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 307 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 325 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 361 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 268 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 144 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 187 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 219 bp overlap
ChIP VCaP_R1881_10C30 GSE32892.AR.VCaP_R1881_10C30 156 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 172 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 155 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 175 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 165 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 224 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 222 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 67 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 150 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 326 bp overlap
ChIP K562 ENCFF938UXQ 269 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 300 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 265 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 214 bp overlap
BRD4 5 datasets
ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 361 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 211 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 338 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 351 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 132 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 65 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 111 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 341 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 260 bp overlap
ERF 2 datasets
ChIP VCaP GSE98809.ERF.VCaP 279 bp overlap
ChIP VCaP_DOX GSE98809.ERF.VCaP_DOX 315 bp overlap
ERG 9 datasets
ChIP VCaP GSE83650.ERG.VCaP 341 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 341 bp overlap
ChIP VCaP GSE28950.ERG.VCaP 238 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 78 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 268 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 144 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 230 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 280 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 361 bp overlap
ETS1 4 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 361 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 361 bp overlap
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 172 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 342 bp overlap
EZH2 2 datasets
ChIP H1 ENCFF232NZA 140 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 361 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 275 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 360 bp overlap
FOXA1 4 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 203 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 271 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 146 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 116 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 273 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 156 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 144 bp overlap
GATA1 10 datasets
ChIP K-562 GSE107726.GATA1.K-562 292 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 185 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 316 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 267 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 361 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 361 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 294 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 175 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 241 bp overlap
GATA2 16 datasets
ChIP ESF GSE108408.GATA2.ESF 334 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 349 bp overlap
ChIP K562 ENCFF088XQT 275 bp overlap
ChIP K562 ENCFF830LLA 361 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 312 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 312 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 322 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 322 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 231 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 340 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 273 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 327 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 352 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 347 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 171 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 310 bp overlap
GATA3 18 datasets
ChIP Jurkat GSE29180.GATA3.Jurkat 361 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 361 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 335 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 312 bp overlap
ChIP MCF-7 ENCFF352QVM 361 bp overlap
ChIP MCF-7 ENCFF437NQS 160 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 361 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 323 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 282 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 266 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 163 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 185 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 144 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 226 bp overlap
ChIP SK-N-SH ENCFF040SSB 233 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 169 bp overlap
ChIP T47D-A1-2_Dex GSE112491.GATA3.T47D-A1-2_Dex 173 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 152 bp overlap
ChIP DE DE-GATA4-1 361 bp overlap
ChIP DE DE-GATA4-2 361 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 174 bp overlap
ChIP foregut GSE117136.GATA4.foregut 361 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 361 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 346 bp overlap
ChIP DE DE-GATA6-2 361 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 254 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 336 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 361 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 361 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 126 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 333 bp overlap
ChIP foregut GSE117136.GATA6.foregut 305 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 278 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 316 bp overlap
HOXB13 8 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 233 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 178 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 232 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 175 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 199 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 141 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 110 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 145 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 296 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 188 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 210 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 211 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 361 bp overlap
ChIP K562 ENCFF320GSD 243 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 208 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 258 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 150 bp overlap
NKX3-1 1 dataset
ChIP LNCaP_DHT GSE28264.NKX3-1.LNCaP_DHT 197 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 135 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 201 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 329 bp overlap
ChIP K562 ENCFF286KMN 361 bp overlap
PKNOX1 6 datasets
ChIP HEK293T ENCFF174WDB 354 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 289 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 354 bp overlap
ChIP K562 ENCFF236IUS 313 bp overlap
ChIP MCF-7 ENCFF116OCS 209 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 343 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 95 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 56 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 185 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 242 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 161 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 258 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 175 bp overlap
SMARCA4 8 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 341 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 361 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 294 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 327 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 323 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 320 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 361 bp overlap
ChIP K562 ENCFF506JCB 361 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 286 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 346 bp overlap
ChIP K562 ENCFF059YCJ 315 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 150 bp overlap
SPI1 4 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 324 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 281 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 318 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 258 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 228 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 336 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 116 bp overlap
ChIP H1 ENCFF881NFR 361 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 361 bp overlap
TAL1 6 datasets
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 202 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 224 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 224 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 150 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 250 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 187 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 203 bp overlap
ChIP K562 ENCFF319QZT 340 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 198 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 280 bp overlap
TP63 8 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 180 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 239 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 177 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 240 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 247 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 265 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 272 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 221 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 361 bp overlap
ZEB2 4 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 361 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 361 bp overlap
ChIP K562 ENCFF795CMH 361 bp overlap
ChIP K562 ENCFF975RXS 357 bp overlap
ZMIZ1 2 datasets
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 361 bp overlap
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 341 bp overlap
ZNF24 11 datasets
ChIP HEK293 ENCFF308WOW 319 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 259 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 361 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 361 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 299 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 347 bp overlap
ChIP K562 ENCFF497GLV 298 bp overlap
ChIP K562 ENCFF615YYW 361 bp overlap
ChIP K562 ENCFF781QQQ 293 bp overlap
ChIP K562 ENCFF877JCX 343 bp overlap
ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 209 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 189 bp overlap