chr6 : 87,122,448 – 87,122,925
477 bp 66 TFs 1 linked gene
This 477 bp open chromatin element is linked to RCN1P1 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RCN1P1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:87,117,448 – 87,127,925
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 268 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 192 bp overlap
ATF2 1 dataset
ChIP HepG2 ENCFF955VER 51 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
BRD4 3 datasets
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 309 bp overlap
ChIP hESC GSE33281.BRD4.hESC 248 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 355 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 477 bp overlap
CDK6 1 dataset
ChIP KB GSE52469.CDK6.KB 195 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 224 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 306 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 267 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 267 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 388 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 323 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 248 bp overlap
ELF1 2 datasets
ChIP A-549 GSE122203.ELF1.A-549 111 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 293 bp overlap
ERG 4 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 431 bp overlap
ChIP K-562 GSE23730.ERG.K-562 302 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 191 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 314 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 477 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 342 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 344 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 338 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 188 bp overlap
ChIP NCI-H3396_ETOH GSE32349.ESR1.NCI-H3396_ETOH 295 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 66 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 223 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 283 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 219 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 199 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 296 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 364 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 411 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 245 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 217 bp overlap
MAF1 2 datasets
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 272 bp overlap
ChIP THP-1_monocytes GSE96800.MAF1.THP-1_monocytes 206 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 439 bp overlap
MBD2 2 datasets
ChIP HeLa GSE41006.MBD2.HeLa 123 bp overlap
ChIP HeLa GSE41006.MBD2.HeLa 179 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 124 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 94 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 288 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 419 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 226 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 346 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 477 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 477 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 161 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 477 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 477 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 467 bp overlap
POU5F1 7 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 227 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 370 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 477 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 206 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 410 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 303 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 419 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 264 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 477 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 477 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 477 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 226 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 373 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 365 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 382 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 293 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 285 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 321 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 193 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 463 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 148 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 465 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 477 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 477 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 256 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 307 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 305 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 226 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 420 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 185 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 477 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 177 bp overlap
ZBTB7A 2 datasets
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 292 bp overlap
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 295 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 121 bp overlap
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