chr6 : 63,263,346 – 63,263,770
424 bp 112 TFs 0 linked genes
This 424 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:63,258,346 – 63,268,770
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
BRD4 4 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 252 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 243 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 243 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 252 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 334 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 203 bp overlap
CDX1 2 datasets
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
Motif DE_24h DE_24h-CDX1_MA0878.3 10 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 217 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 302 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 253 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 415 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 221 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ERF::FOXI1 1 dataset
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 9 datasets
ChIP RWPE-1 GSE114241.ERG.RWPE-1 294 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 185 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 198 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 209 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 222 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 167 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 216 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 234 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 252 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 140 bp overlap
ETS1 1 dataset
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ETS2 1 dataset
Motif DE_12h DE_12h-ETS2_MA1484.2 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 424 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 234 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 187 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 197 bp overlap
ChIP A-673_D7 GSE129155.FLI1.A-673_D7 202 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 424 bp overlap
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 260 bp overlap
FOS::JUN 2 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
FOSL1 1 dataset
ChIP 143B GSE74230.FOSL1.143B 225 bp overlap
FOSL1::JUND 1 dataset
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 2 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 272 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 324 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 230 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 2 datasets
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 235 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 197 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 267 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 334 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 227 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 352 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 312 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 309 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 278 bp overlap
GFI1 2 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 371 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 234 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD3 2 datasets
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Motif DE_24h DE_24h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
Hmx2 2 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_24h DE_24h-Hmx2_MA0897.2 15 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 392 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 405 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 386 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 369 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 359 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 277 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 135 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 285 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 424 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 240 bp overlap
JUND 5 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 237 bp overlap
ChIP H1 ENCFF010YXS 204 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 226 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 300 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 387 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 260 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 333 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 424 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 348 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 354 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 424 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nanog 2 datasets
Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap
Motif DE_24h DE_24h-Nanog_MA2339.1 7 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 239 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 196 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 323 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 424 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 303 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 369 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 285 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 9 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 286 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 227 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 140 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 215 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 254 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 231 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 185 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 203 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 210 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 196 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 293 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 102 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 288 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SREBF1 4 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 195 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 223 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 228 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 424 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 388 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
TCF7 2 datasets
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 275 bp overlap
ChIP HCT116 ENCFF038POZ 205 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 185 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 205 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 214 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 205 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 128 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
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