chr6 : 10,883,851 – 10,884,267
416 bp 55 TFs 3 linked genes
This 416 bp open chromatin element is linked to GCM2, ENSG00000235051, and SYCP2L and is bound by 55 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GCM2 1.8 kb Proximal Proximity
ENSG00000235051 2.1 kb Proximal Proximity
SYCP2L 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:10,878,851 – 10,889,267
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 145 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 168 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 407 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 123 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 416 bp overlap
BRD4 4 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 316 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 293 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 201 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 261 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 263 bp overlap
CEBPB 1 dataset
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 111 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 154 bp overlap
CTCF 1 dataset
ChIP erythroid GSE67783.CTCF.erythroid 208 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 76 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 291 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 355 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 263 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 224 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 208 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 139 bp overlap
EZH2 28 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 265 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 280 bp overlap
ChIP H1 ENCFF232NZA 416 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 342 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 334 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 305 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 248 bp overlap
ChIP astrocyte ENCFF365JTP 94 bp overlap
ChIP astrocyte ENCFF365JTP 343 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 408 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 173 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 416 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 79 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 401 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 230 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 393 bp overlap
ChIP hESC GSE113817.EZH2.hESC 328 bp overlap
ChIP hepatocyte ENCFF118DKH 310 bp overlap
ChIP hepatocyte ENCFF118DKH 257 bp overlap
ChIP hepatocyte ENCFF552DZB 416 bp overlap
ChIP keratinocyte ENCFF070STK 416 bp overlap
ChIP keratinocyte ENCFF070STK 192 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 385 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 382 bp overlap
ChIP neural cell ENCFF610EPB 144 bp overlap
ChIP neural progenitor cell ENCFF018MKA 416 bp overlap
ChIP neural progenitor cell ENCFF018MKA 416 bp overlap
ChIP neural progenitor cell ENCFF472NFV 416 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 410 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 295 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 198 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 416 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 337 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 296 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 341 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 348 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 381 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 90 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 393 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 258 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 218 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 190 bp overlap
NCOR2 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 236 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 258 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 309 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 313 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 353 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 377 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 324 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 127 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 201 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 357 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 182 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 292 bp overlap
RBM39 1 dataset
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 209 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 352 bp overlap
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 258 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 208 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 56 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 277 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 328 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 225 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 336 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 123 bp overlap
SETDB1 1 dataset
ChIP K-562 ENCSR000EWI.SETDB1.K-562 179 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 319 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 241 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 312 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 385 bp overlap
ChIP H1 ENCFF881NFR 416 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 352 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 298 bp overlap
ChIP NT2/D1 ENCFF574SXS 416 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 309 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 235 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 204 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 70 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 77 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 286 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 364 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 212 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 187 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 247 bp overlap
ZNF512 2 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 74 bp overlap
ChIP WTC11 ENCFF086TTM 89 bp overlap
ZNF737 1 dataset
ChIP Hep-G2 ENCSR127IHN.ZNF737.Hep-G2 237 bp overlap
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