chr5 : 173,963,957 173,964,135
178 bp 56 TFs 1 linked gene
This 178 bp open chromatin element is linked to C5orf47 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
C5orf47 9.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:173,958,957 – 173,969,135
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 64 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 76 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 178 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 68 bp overlap
ATF4 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 117 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 162 bp overlap
BRD2 8 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 91 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 96 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 76 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 76 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 72 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 133 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 107 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 51 bp overlap
BRD4 12 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 172 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 69 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 78 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 108 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 108 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 164 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 178 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 165 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 136 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 62 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 146 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 65 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 84 bp overlap
CDKN1B 2 datasets
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 145 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 177 bp overlap
CEBPB 2 datasets
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 93 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 131 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 178 bp overlap
CREB1 6 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 128 bp overlap
ChIP A-549 ENCSR000BRC.CREB1.A-549 82 bp overlap
ChIP GM23338 ENCFF432ZEW 178 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 178 bp overlap
ChIP H1 ENCFF955PMP 178 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 134 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 54 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 129 bp overlap
CTCF 1 dataset
ChIP erythroid GSE67783.CTCF.erythroid 61 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 144 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 84 bp overlap
ELF1 5 datasets
ChIP MCF-7 ENCFF305BNP 139 bp overlap
ChIP MCF-7 ENCFF687CWI 122 bp overlap
ChIP MCF-7 ENCSR502NRF.ELF1.MCF-7 118 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 72 bp overlap
ChIP SK-N-SH ENCFF871YHY 145 bp overlap
ERG 6 datasets
ChIP VCaP GSE28950.ERG.VCaP 77 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 68 bp overlap
ChIP VCaP_DHT GSE79128.ERG.VCaP_DHT 106 bp overlap
ChIP VCaP_SH1_DHT GSE79128.ERG.VCaP_SH1_DHT 148 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 127 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 67 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 114 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 153 bp overlap
FOXA1 7 datasets
ChIP LS180 GSE140533.FOXA1.LS180 75 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 96 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 70 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 170 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 76 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 153 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 66 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 178 bp overlap
GTF2B 1 dataset
ChIP HeLa_ASYNC GSE71848.GTF2B.HeLa_ASYNC 84 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 110 bp overlap
HOXB13 19 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 68 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 68 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 128 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 73 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 76 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 108 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 134 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 104 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 106 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 57 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 96 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 96 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 61 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 80 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 129 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 76 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 51 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 67 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 110 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 150 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 131 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 53 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 55 bp overlap
MED1 3 datasets
ChIP VCaP_DHT GSE125245.MED1.VCaP_DHT 133 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 178 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 178 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 77 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 62 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 157 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 178 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 106 bp overlap
NR3C1 4 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 178 bp overlap
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 92 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 154 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 168 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 113 bp overlap
POLR2A 22 datasets
ChIP GM19193 ENCFF599VTO 178 bp overlap
ChIP H1 ENCFF566JSR 165 bp overlap
ChIP H1 ENCFF770YBQ 153 bp overlap
ChIP H1 ENCFF833NJP 98 bp overlap
ChIP H54 ENCFF398BXN 75 bp overlap
ChIP K562 ENCFF137JSF 178 bp overlap
ChIP body of pancreas ENCFF501FEC 122 bp overlap
ChIP body of pancreas ENCFF675RCN 178 bp overlap
ChIP body of pancreas ENCFF675RCN 165 bp overlap
ChIP body of pancreas ENCFF727UBE 178 bp overlap
ChIP breast epithelium ENCFF045XXN 178 bp overlap
ChIP breast epithelium ENCFF955FMX 178 bp overlap
ChIP neural cell ENCFF604SPB 56 bp overlap
ChIP prostate gland ENCFF832RQK 152 bp overlap
ChIP prostate gland ENCFF881OMH 145 bp overlap
ChIP prostate gland ENCFF882MXU 178 bp overlap
ChIP prostate gland ENCFF882MXU 64 bp overlap
ChIP spleen ENCFF044PYR 159 bp overlap
ChIP thyroid gland ENCFF979LRR 86 bp overlap
ChIP transverse colon ENCFF193UMS 178 bp overlap
ChIP upper lobe of left lung ENCFF504HCM 125 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 178 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 171 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 178 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 178 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 125 bp overlap
ChIP GM23338 ENCFF333SNB 178 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 178 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 178 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 120 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 178 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 178 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 139 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 178 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 122 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 178 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 56 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 178 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 178 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 146 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 87 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 57 bp overlap
SUPT5H 5 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 178 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 178 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 75 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 105 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 121 bp overlap
TAF1 5 datasets
ChIP A-549 ENCSR000BPF.TAF1.A-549 60 bp overlap
ChIP H1 ENCFF478SZO 108 bp overlap
ChIP MCF-7 ENCFF091WNP 90 bp overlap
ChIP SK-N-SH ENCFF630ERV 90 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 163 bp overlap
TBP 9 datasets
ChIP H1 ENCFF859IIO 95 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 175 bp overlap
ChIP hESC GSE122298.TBP.hESC 158 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 118 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 151 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 87 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 123 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 92 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 134 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 73 bp overlap
ChIP Panc1 ENCFF829HHL 168 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 94 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 101 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 178 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 178 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 139 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 178 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 178 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 103 bp overlap