chr5 : 154,690,578 – 154,690,884

306 bp 65 TFs 1 linked gene

This 306 bp open chromatin element is linked to LARP1 and is bound by 65 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LARP1		7.6 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

65 transcription factors

AR 4 datasets

ChIP MCF-7 GSE48930.AR.MCF-7 155 bp overlap

ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 196 bp overlap

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 191 bp overlap

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 282 bp overlap

ARID1A 1 dataset

ChIP H9 GSE139260.ARID1A.H9 213 bp overlap

ARNT 1 dataset

ChIP RCC4 GSE85352.ARNT.RCC4 186 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 172 bp overlap

BRD4 5 datasets

ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 205 bp overlap

ChIP 402-91 GSE111253.BRD4.402-91 227 bp overlap

ChIP COLO-741 GSE73319.BRD4.COLO-741 221 bp overlap

ChIP hESC GSE33281.BRD4.hESC 202 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 292 bp overlap

CBFB 1 dataset

ChIP ME-1 GSE46044.CBFB.ME-1 242 bp overlap

CBX1 1 dataset

ChIP K-562 ENCSR948QLZ.CBX1.K-562 231 bp overlap

CDK6 1 dataset

ChIP KB GSE52469.CDK6.KB 110 bp overlap

CDK9 1 dataset

ChIP HCT-116 GSE72622.CDK9.HCT-116 208 bp overlap

CTCF 2 datasets

ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 216 bp overlap

ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 243 bp overlap

CTCFL 1 dataset

ChIP K-562 GSE70764.CTCFL.K-562 197 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF335XTP 143 bp overlap

ELF1 1 dataset

ChIP A-549 GSE122203.ELF1.A-549 163 bp overlap

ERG 4 datasets

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 306 bp overlap

ChIP K-562 GSE23730.ERG.K-562 198 bp overlap

ChIP MCF-7 GSE23730.ERG.MCF-7 181 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 172 bp overlap

ESR1 5 datasets

ChIP Ishikawa GSE99905.ESR1.Ishikawa 248 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 237 bp overlap

ChIP MCF-7 GSE48930.ESR1.MCF-7 193 bp overlap

ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 174 bp overlap

ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 221 bp overlap

EZH2 1 dataset

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 71 bp overlap

FLI1 1 dataset

ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 256 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 290 bp overlap

FOXP1 1 dataset

ChIP WTC11 ENCFF338WGC 306 bp overlap

GTF2F1 2 datasets

ChIP K-562 GSE120104.GTF2F1.K-562 168 bp overlap

ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 199 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 306 bp overlap

HMGN3 1 dataset

ChIP K-562 ENCSR000DOB.HMGN3.K-562 181 bp overlap

HNRNPLL 1 dataset

ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 180 bp overlap

JUN 1 dataset

ChIP HUES-8 GSE109524.JUN.HUES-8 98 bp overlap

KDM5B 1 dataset

ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 266 bp overlap

KDM6B 1 dataset

ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 254 bp overlap

KLF4 1 dataset

ChIP hiPSC GSE56567.KLF4.hiPSC 240 bp overlap

MBD2 1 dataset

ChIP HeLa GSE41006.MBD2.HeLa 214 bp overlap

MED1 1 dataset

ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 216 bp overlap

NCAPH2 1 dataset

ChIP HEK293 GSE97540.NCAPH2.HEK293 306 bp overlap

NR2F2 1 dataset

ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 306 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BJR.NR3C1.A-549 172 bp overlap

OGG1 3 datasets

ChIP HEK293 GSE89017.OGG1.HEK293 306 bp overlap

ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 306 bp overlap

ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 306 bp overlap

PARP1 1 dataset

ChIP MCF-10A GSE93038.PARP1.MCF-10A 306 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 298 bp overlap

POU2F1 2 datasets

ChIP T-47D GSE148277.POU2F1.T-47D 243 bp overlap

ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 278 bp overlap

POU5F1 4 datasets

ChIP BG03 GSE21614.POU5F1.BG03 210 bp overlap

ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 106 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 217 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 205 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 232 bp overlap

RELA 3 datasets

ChIP 786-O GSE109953.RELA.786-O 92 bp overlap

ChIP HEK293_30_min GSE89017.RELA.HEK293_30_min 306 bp overlap

ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 306 bp overlap

RORC 2 datasets

ChIP HCC70 GSE126380.RORC.HCC70 303 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 306 bp overlap

RUNX1 4 datasets

ChIP AML GSE111821.RUNX1.AML 306 bp overlap

ChIP AML_Blast GSE60130.RUNX1.AML_Blast 144 bp overlap

ChIP CD34 GSE64862.RUNX1.CD34 144 bp overlap

ChIP Jurkat GSE85524.RUNX1.Jurkat 243 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 180 bp overlap

RXR 1 dataset

ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 180 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 169 bp overlap

SMAD4 1 dataset

ChIP Caco-2 GSE112946.SMAD4.Caco-2 106 bp overlap

SMC1 1 dataset

ChIP HCT-116 GSE131606.SMC1.HCT-116 168 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 306 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 296 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 93 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 306 bp overlap

TAF15 1 dataset

ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 193 bp overlap

TCF3 1 dataset

ChIP GM12878 ENCSR000BQT.TCF3.GM12878 87 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 199 bp overlap

TFIIIC 1 dataset

ChIP HEK293 GSE119418.TFIIIC.HEK293 306 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 279 bp overlap

TRIM28 1 dataset

ChIP HCT-116 GSE72622.TRIM28.HCT-116 217 bp overlap

USF2 1 dataset

ChIP K-562 GSE111469.USF2.K-562 256 bp overlap

WDR5 1 dataset

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 306 bp overlap

ZBTB33 1 dataset

ChIP K562 ENCFF427SDV 306 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 306 bp overlap

ZNF143 1 dataset

ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 166 bp overlap

ZNF202 1 dataset

ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 222 bp overlap

ZNF407 1 dataset

ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 242 bp overlap

ZNF445 1 dataset

ChIP HEK293T GSE78099.ZNF445.HEK293T 163 bp overlap

ZNF768 1 dataset

ChIP HepG2 ENCFF388QCK 103 bp overlap

ZNF891 1 dataset

ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 192 bp overlap