chr1 : 98,458,572 98,458,960
388 bp 71 TFs 0 linked genes
This 388 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:98,453,572 – 98,463,960
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 227 bp overlap
ASH2L 3 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 222 bp overlap
ChIP HepG2 ENCFF207QHL 310 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 306 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
BHLHE40 2 datasets
Motif DE_12h DE_12h-BHLHE40_MA0464.3 8 bp overlap
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 199 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 215 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 124 bp overlap
CHD2 4 datasets
ChIP H1 ENCFF991MKH 312 bp overlap
ChIP Hep-G2 ENCSR000EED.CHD2.Hep-G2 238 bp overlap
ChIP HepG2 ENCFF968LAV 135 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 186 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 388 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 157 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CLOCK 1 dataset
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 172 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 242 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 113 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 207 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 129 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 133 bp overlap
FOXA1 4 datasets
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 253 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 358 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 355 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 388 bp overlap
FOXA2 2 datasets
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 250 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 229 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 106 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 185 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 249 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 142 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 50 bp overlap
ChIP K562 ENCFF455EEO 115 bp overlap
MAX 11 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF601FOM 257 bp overlap
ChIP H1 ENCFF601FOM 235 bp overlap
ChIP H1 ENCFF914VQY 276 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 197 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 160 bp overlap
ChIP HepG2 ENCFF479OHI 346 bp overlap
ChIP HepG2 ENCFF507HCX 388 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 163 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 236 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 158 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 267 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 388 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 353 bp overlap
MYC 1 dataset
ChIP OVCAR-3 GSE154941.MYC.OVCAR-3 198 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 388 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 203 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 380 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 388 bp overlap
ChIP hESC GSE18292.NANOG.hESC 94 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 232 bp overlap
PBX3 2 datasets
ChIP GM12878 ENCFF285BQQ 148 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 106 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 159 bp overlap
PKNOX1 3 datasets
ChIP GM12878 ENCFF589FCY 202 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 225 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 226 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 253 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 303 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 157 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 146 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 133 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 240 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 220 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 170 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 224 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 114 bp overlap
SMARCA4 12 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 309 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 214 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 106 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 388 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 338 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 286 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 309 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 259 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 268 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 221 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 261 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 274 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 326 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 238 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 266 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 388 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 388 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 374 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 286 bp overlap
ChIP HepG2 ENCFF767OCK 388 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 225 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 219 bp overlap
STAT3 3 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 192 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 241 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 325 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 120 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 352 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 121 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 281 bp overlap
ChIP HepG2 ENCFF628OFQ 323 bp overlap
TCF7L2 6 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 269 bp overlap
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 231 bp overlap
ChIP HepG2 ENCFF510OLG 368 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 388 bp overlap
ChIP Panc1 ENCFF829HHL 388 bp overlap
ChIP Panc1 ENCFF829HHL 280 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 285 bp overlap
ChIP HepG2 ENCFF661PNM 371 bp overlap
TEAD4 7 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 235 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 147 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 341 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 388 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 372 bp overlap
TFDP1 1 dataset
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
YY1AP1 3 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 340 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 388 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 255 bp overlap
ZBTB33 4 datasets
Motif DE_12h DE_12h-ZBTB33_MA0527.2 10 bp overlap
ChIP Hep-G2 ENCSR000BHR.ZBTB33.Hep-G2 167 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 199 bp overlap
ChIP liver ENCSR345YWJ.ZBTB33.liver 159 bp overlap
ZNF24 3 datasets
ChIP GM12878 ENCFF688STO 71 bp overlap
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 110 bp overlap
ChIP Hep-G2 ENCSR362NWP.ZNF24.Hep-G2 157 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap