chr1 : 11,876,145 11,876,721
576 bp 56 TFs 11 linked genes
This 576 bp open chromatin element is linked to 11 target genes and is bound by 56 transcription factors.
Linked Genes
11 genes
Gene Expression Dist. to TSS Distance Link type
KIAA2013 50.0 kb Distal Multiome
PLOD1 58.3 kb Distal Multiome
CLCN6 70.2 kb Distal Multiome
MTHFR 73.1 kb Distal Multiome
MFN2 103.8 kb Distal Multiome
AGTRAP 140.3 kb Distal Multiome
MIIP 143.0 kb Distal Multiome
DRAXIN 184.7 kb Distal Multiome
MAD2L2 195.3 kb Distal Multiome
FBXO44 221.6 kb Distal Multiome
FBXO2 222.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:11,871,145 – 11,881,721
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 126 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 232 bp overlap
ATF4 1 dataset
ChIP K562 ENCFF674KTF 154 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 254 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 213 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 529 bp overlap
EP300 1 dataset
ChIP upper lobe of left lung ENCFF024QBJ 190 bp overlap
EZH2 2 datasets
ChIP SF8628 GSE94834.EZH2.SF8628 83 bp overlap
ChIP T98G GSE112240.EZH2.T98G 238 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 159 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 255 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 457 bp overlap
ChIP DE DE-FOXA2-2 273 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 208 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 215 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 555 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 211 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 194 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 194 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 248 bp overlap
ChIP SH-SY5Y ENCFF485YIB 323 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 264 bp overlap
ChIP SK-N-SH ENCFF764OZD 336 bp overlap
GATA3 2 datasets
ChIP BE2C GSE65664.GATA3.BE2C 221 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 230 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 576 bp overlap
ChIP DE DE-GATA4-2 576 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 234 bp overlap
ChIP foregut GSE117136.GATA4.foregut 259 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 576 bp overlap
ChIP DE DE-GATA6-2 576 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 576 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 576 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 576 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 576 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 576 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 576 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 576 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 355 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 444 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 351 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 466 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 514 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 310 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 406 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 246 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 107 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 275 bp overlap
POLR2A 1 dataset
ChIP upper lobe of left lung ENCFF199JUI 404 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 196 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 152 bp overlap
REST 1 dataset
ChIP LNCaP GSE119385.REST.LNCaP 294 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 562 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 563 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 483 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 576 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 576 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 206 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 305 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 576 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 281 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 147 bp overlap
TFAP2B 2 datasets
ChIP SK-N-SH ENCFF869XXQ 419 bp overlap
ChIP SK-N-SH ENCFF869XXQ 321 bp overlap
ZBTB21 2 datasets
ChIP HEK293 ENCFF509WYZ 185 bp overlap
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 167 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 417 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 297 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 119 bp overlap
ZNF18 1 dataset
ChIP HEK293 GSE76494.ZNF18.HEK293 153 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 542 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 552 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 382 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 504 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 363 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 149 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 147 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 322 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 182 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 351 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 380 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 157 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 219 bp overlap
ZNF629 3 datasets
ChIP HEK293 ENCFF096ELQ 302 bp overlap
ChIP HEK293 ENCFF096ELQ 87 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 192 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 283 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 188 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 164 bp overlap