chr5 : 74,507,243 74,508,516
1,273 bp 61 TFs 5 linked genes
This 1.3 kb open chromatin element is linked to 5 target genes and is bound by 61 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
LINC01331 28.9 kb Distal Multiome
ENC1 132.8 kb Distal Multiome
HEXB 177.2 kb Distal Multiome
GFM2 259.2 kb Distal Multiome
NSA2 259.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:74,502,243 – 74,513,516
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 133 bp overlap
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 236 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 136 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD4 2 datasets
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 232 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 132 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 215 bp overlap
CRX 2 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 234 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 232 bp overlap
ChIP BLaER1 ENCFF274GAT 140 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 590 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 273 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 284 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 967 bp overlap
ChIP DE DE-FOXA2-2 1152 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 317 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 268 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 284 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 265 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 339 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 253 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 167 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 221 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 1206 bp overlap
ChIP DE DE-GATA4-2 1273 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 212 bp overlap
ChIP foregut GSE117136.GATA4.foregut 325 bp overlap
ChIP foregut GSE117136.GATA4.foregut 602 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 594 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 338 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 155 bp overlap
ChIP DE DE-GATA6-1 1168 bp overlap
ChIP DE DE-GATA6-2 1235 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 712 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 889 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 683 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1174 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1021 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 775 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1137 bp overlap
ChIP foregut GSE117136.GATA6.foregut 341 bp overlap
ChIP foregut GSE117136.GATA6.foregut 599 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 486 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 437 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 288 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 559 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 507 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 373 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 254 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 419 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 469 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 620 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 167 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 62 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 325 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 352 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 197 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 527 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 335 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 151 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 251 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 206 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 385 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 182 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 232 bp overlap
Nanog 1 dataset
Motif DE_72h DE_72h-Nanog_MA2339.1 7 bp overlap
Nr2e3 1 dataset
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 183 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 292 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 373 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 844 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 96 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 150 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 210 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 294 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 349 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 236 bp overlap
SIX2 4 datasets
ChIP HEK GSE73865.SIX2.HEK 299 bp overlap
ChIP HEK GSE73865.SIX2.HEK 202 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 615 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 718 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 893 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 310 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 738 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 729 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 369 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 279 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 191 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 320 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 535 bp overlap
SNAI2 2 datasets
ChIP RD GSE137168.SNAI2.RD 219 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 293 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 566 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1273 bp overlap
SOX21 1 dataset
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 763 bp overlap
Sox1 1 dataset
Motif DE_72h DE_72h-Sox1_MA0870.1 15 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 214 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 103 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 185 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 120 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 113 bp overlap
ZNF677 1 dataset
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap