chr1 : 90,841,491 90,842,027
536 bp 70 TFs 3 linked genes
This 536 bp open chromatin element is linked to LINC02788, LINC02609, and LINC01763 and is bound by 70 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
LINC02788 5.8 kb Proximal Proximity
LINC02609 5.9 kb Proximal Proximity
LINC01763 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:90,836,491 – 90,847,027
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 176 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 170 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 536 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 498 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 106 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 511 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 325 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 278 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 494 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 288 bp overlap
BRD4 2 datasets
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 259 bp overlap
ChIP hESC GSE33281.BRD4.hESC 131 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 150 bp overlap
CLOCK 1 dataset
ChIP BA40_2 GSE96659.CLOCK.BA40_2 135 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 235 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 330 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 461 bp overlap
CTCF 2 datasets
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 238 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 157 bp overlap
ChIP BLaER1 ENCFF274GAT 405 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 198 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 476 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 158 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 82 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 288 bp overlap
ESR1 4 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 281 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 288 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 269 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 211 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 509 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 300 bp overlap
EZH2 6 datasets
ChIP GM23338 ENCFF613YON 343 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 245 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 536 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 187 bp overlap
ChIP keratinocyte ENCFF070STK 523 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 536 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 235 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 204 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 516 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 179 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 536 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 490 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 233 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 446 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 352 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 259 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 536 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 219 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 323 bp overlap
ChIP H1 ENCFF078LED 499 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 536 bp overlap
KDM4C 2 datasets
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 209 bp overlap
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 130 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 69 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 208 bp overlap
ChIP WTC11 ENCFF223QFY 425 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 213 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 536 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 51 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 78 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 536 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 97 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 180 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 471 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 536 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 364 bp overlap
RAD21 1 dataset
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 190 bp overlap
RFX1 5 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 95 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 63 bp overlap
ChIP K562 ENCFF809XVG 131 bp overlap
ChIP MCF-7 ENCFF973QAD 101 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 74 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 507 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 536 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 486 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 149 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 261 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 165 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 183 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 196 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 149 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 65 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 224 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 159 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
SRSF3 2 datasets
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 305 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 245 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 296 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 536 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 202 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 115 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 201 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 508 bp overlap
ChIP K562 ENCFF875HLX 169 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 341 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 236 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 362 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 215 bp overlap