chr5 : 58,072,197 – 58,072,739
542 bp 69 TFs 0 linked genes
This 542 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:58,067,197 – 58,077,739
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 14 datasets
ChIP DU145 GSE47987.AR.DU145 196 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 200 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 158 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 194 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 206 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 171 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 186 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 300 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 281 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 287 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 304 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 83 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 151 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 216 bp overlap
ARID2 3 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 504 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 239 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 454 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 241 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 192 bp overlap
BRD2 1 dataset
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 254 bp overlap
BRD4 12 datasets
ChIP HT29 GSE73319.BRD4.HT29 298 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 407 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 373 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 436 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 336 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 426 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 74 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 141 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 513 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 182 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 180 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 259 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 202 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 488 bp overlap
CTCF 1 dataset
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
CTCFL 1 dataset
ChIP K-562 ENCSR000BNK.CTCFL.K-562 84 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 322 bp overlap
DPF2 2 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 449 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 274 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 377 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 494 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 515 bp overlap
ChIP neural cell ENCFF442QNK 310 bp overlap
ESR1 6 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 184 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 542 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 441 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 173 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 507 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 382 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 324 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 347 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 259 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 229 bp overlap
FOXA1 7 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 155 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 172 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 212 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 89 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 393 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 262 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 437 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 465 bp overlap
ChIP DE DE-FOXA2-2 542 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 542 bp overlap
ChIP DE DE-GATA4-2 542 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 235 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 488 bp overlap
ChIP DE DE-GATA6-2 542 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 542 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 542 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 542 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 216 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 290 bp overlap
IRF1 1 dataset
ChIP AsPC-1_IFNg GSE141606.IRF1.AsPC-1_IFNg 99 bp overlap
IRF2 1 dataset
ChIP K-562 ENCSR376WCJ.IRF2.K-562 103 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 260 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 526 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 421 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 441 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 542 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 171 bp overlap
ChIP SK-N-SH ENCFF285LXR 334 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 166 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 385 bp overlap
MXI1 3 datasets
ChIP neural ENCSR934NHU.MXI1.neural 231 bp overlap
ChIP neural cell ENCFF623HQN 472 bp overlap
ChIP neural cell ENCFF623HQN 270 bp overlap
MYC 2 datasets
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 524 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 319 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 251 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 248 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 249 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 333 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 189 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 309 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 195 bp overlap
ChIP NGP GSE80151.MYCN.NGP 276 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 241 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 241 bp overlap
NR3C1 4 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 179 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 277 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 542 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 205 bp overlap
PGR 12 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 312 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 263 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 353 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 262 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 253 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 386 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 354 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 285 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 381 bp overlap
ChIP T-47D_progesterone_siCEBPA GSE132649.PGR.T-47D_progesterone_siCEBPA 302 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 193 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 542 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 276 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 255 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 254 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 479 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 414 bp overlap
ChIP K562 ENCFF236IUS 315 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 185 bp overlap
POU4F2 1 dataset
Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 278 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 320 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 158 bp overlap
RAD21 3 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 512 bp overlap
ChIP neural cell ENCFF564MOT 485 bp overlap
ChIP neural cell ENCFF564MOT 284 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 356 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 418 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 386 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 239 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 420 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 542 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 518 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 542 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 542 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 542 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 542 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 235 bp overlap
SMARCA4 7 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 261 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 93 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 236 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 351 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 358 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 410 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 202 bp overlap
SMARCC1 6 datasets
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 198 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 179 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 236 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 335 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 264 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 538 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 484 bp overlap
ChIP neural cell ENCFF795YGY 407 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 449 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 542 bp overlap
SOX2 3 datasets
ChIP hiPSC GSE67282.SOX2.hiPSC 297 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 301 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 371 bp overlap
SS18 4 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 190 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 245 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 91 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 106 bp overlap
STAT3 1 dataset
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 346 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 420 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 188 bp overlap
TCF7L2 1 dataset
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 373 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 318 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 171 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 318 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 291 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 152 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 168 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 368 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 296 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 186 bp overlap
ZNF354C 1 dataset
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 306 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 75 bp overlap
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 316 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 186 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 335 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 282 bp overlap
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