chr5 : 53,884,300 – 53,884,739
439 bp 79 TFs 1 linked gene
This 439 bp open chromatin element is linked to ENSG00000272416 and is bound by 79 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000272416 3.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:53,879,300 – 53,889,739
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
BARX2 1 dataset
Motif DE_24h DE_24h-BARX2_MA1471.2 9 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 201 bp overlap
CBFA2T3 1 dataset
ChIP Kasumi-1 GSE126953.CBFA2T3.Kasumi-1 115 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 106 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR620VIC.CEBPG.K-562 127 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 186 bp overlap
EGR2 1 dataset
Motif DE_24h DE_24h-EGR2_MA0472.2 11 bp overlap
EP300 2 datasets
ChIP AML GSE131939.EP300.AML 164 bp overlap
ChIP Kasumi-1 GSE115115.EP300.Kasumi-1 201 bp overlap
ERF::HOXB13 2 datasets
Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_24h DE_24h-ERFHOXB13_MA1937.2 13 bp overlap
ERG 4 datasets
ChIP ME-1 GSE46044.ERG.ME-1 312 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 191 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 212 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 210 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV6 2 datasets
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
Motif DE_24h DE_24h-ETV6_MA0645.2 9 bp overlap
EVI1 3 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 303 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 266 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.EVI1.SKH1_RUNX1-EVI1_KD 245 bp overlap
FLI1 3 datasets
ChIP SEM GSE117864.FLI1.SEM 181 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 239 bp overlap
ChIP UAE GSE23730.FLI1.UAE 131 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 338 bp overlap
ChIP DE DE-FOXA2-2 318 bp overlap
FOXB1 2 datasets
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 274 bp overlap
GABPA 1 dataset
ChIP RWPE-1 GSE29808.GABPA.RWPE-1 239 bp overlap
GATA2 2 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 192 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 222 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 278 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 293 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 154 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 138 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 225 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 252 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 161 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
KMT2A 3 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 234 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 188 bp overlap
ChIP L826 GSE83671.KMT2A.L826 269 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 255 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 218 bp overlap
LMO2 4 datasets
ChIP Kasumi-1 GSE43834.LMO2.Kasumi-1 154 bp overlap
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 241 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 204 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 230 bp overlap
LYL1 2 datasets
ChIP NB4 GSE63484.LYL1.NB4 149 bp overlap
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 138 bp overlap
MECOM 3 datasets
ChIP SKH1 GSE102697.MECOM.SKH1 187 bp overlap
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 231 bp overlap
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 237 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 227 bp overlap
MEIS3 2 datasets
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MXI1 1 dataset
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
MYB 8 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
ChIP DU528 GSE94000.MYB.DU528 335 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 177 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 437 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 324 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 221 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 201 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 222 bp overlap
MYF6 2 datasets
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Motif DE_24h DE_24h-MYF6_MA0667.1 10 bp overlap
MYOD1 5 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 285 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 298 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 269 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 262 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 206 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 235 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 224 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 267 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 179 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 166 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 199 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 184 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NRF1 1 dataset
ChIP Namalwa GSE53133.NRF1.Namalwa 165 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 176 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 279 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 85 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 350 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 198 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 203 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 280 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 181 bp overlap
RNF2 2 datasets
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 264 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 202 bp overlap
RUNX1 15 datasets
ChIP 697 GSE138031.RUNX1.697 168 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 293 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 226 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 237 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 209 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 236 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 236 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 237 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 215 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 205 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 189 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 223 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 223 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 148 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 212 bp overlap
RUNX1-RUNX1T1 1 dataset
ChIP AML GSE131939.RUNX1-RUNX1T1.AML 133 bp overlap
RUNX1T1 6 datasets
ChIP CD34 GSE80773.RUNX1T1.CD34 294 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 222 bp overlap
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 212 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 246 bp overlap
ChIP Kasumi-1_E2 GSE102697.RUNX1T1.Kasumi-1_E2 92 bp overlap
ChIP Kasumi-1_shControl-AE GSE115115.RUNX1T1.Kasumi-1_shControl-AE 82 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 437 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 220 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 149 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 175 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 348 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 384 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 368 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 351 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 366 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 362 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 337 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 213 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 231 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 345 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 257 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 191 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 166 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 227 bp overlap
SPI1 2 datasets
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 205 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 176 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
TAL1 3 datasets
ChIP ME-1 GSE46044.TAL1.ME-1 144 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 228 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 210 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 203 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 207 bp overlap
TCF3 3 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 194 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 304 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 287 bp overlap
TCF3-PBX1 1 dataset
ChIP 697_HF GSE138031.TCF3-PBX1.697_HF 241 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 276 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 2 datasets
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 2 datasets
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
TP73 2 datasets
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Motif DE_24h DE_24h-TP73_MA0861.2 16 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 187 bp overlap
ZNF343 2 datasets
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
Motif DE_24h DE_24h-ZNF343_MA1711.2 16 bp overlap
Zfp961 1 dataset
Motif DE_24h DE_24h-Zfp961_MA2126.1 8 bp overlap
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