chr5 : 34,547,973 34,548,826
853 bp 73 TFs 2 linked genes
This 853 bp open chromatin element is linked to RAI14 and TTC23L and is bound by 73 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
RAI14 108.1 kb Distal Multiome
TTC23L 290.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:34,542,973 – 34,553,826
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 161 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 426 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 204 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 161 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 320 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 140 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 282 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 166 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 70 bp overlap
ESRRA 1 dataset
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 258 bp overlap
Esrrg 1 dataset
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 402 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 148 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 125 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 350 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 176 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 350 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 176 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 491 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 55 bp overlap
HNF4A 2 datasets
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 360 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 330 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 381 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 396 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 86 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 130 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 289 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 635 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 392 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 288 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 709 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 572 bp overlap
ChIP hESC GSE18292.NANOG.hESC 228 bp overlap
NKX2-3 1 dataset
Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nkx2-1 1 dataset
Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
POU5F1 5 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 561 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 476 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 292 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 431 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 296 bp overlap
PPARD 1 dataset
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PROP1 1 dataset
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
Ppara 1 dataset
Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap
RAD21 2 datasets
ChIP WA09 GSE105028.RAD21.WA09 287 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 195 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
Rarg 1 dataset
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
SMARCA4 2 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 215 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 180 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 254 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 463 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 206 bp overlap
ChIP hESC GSE18292.SOX2.hESC 188 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 349 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 154 bp overlap
SPI1 1 dataset
ChIP K562 ENCFF410ORC 65 bp overlap
SRF 1 dataset
ChIP K562 ENCFF766EOO 166 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TBP 5 datasets
ChIP hESC GSE122298.TBP.hESC 294 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 216 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 280 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 288 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 532 bp overlap
TRIM28 3 datasets
ChIP K562 ENCFF671NCI 235 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 216 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 161 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF652 1 dataset
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 229 bp overlap