Predicted to enable actin binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Located in cytosol; fibrillar center; and nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for RAI14. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RAI14 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RAI14, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:34,411,399–34,412,285 | 244.6 kb | Distal (>10kb) Multiome | 313 | |
| chr5:34,474,588–34,475,820 | 180.9 kb | Distal (>10kb) Multiome | 304 | |
| chr5:34,523,029–34,523,610 | 133.2 kb | Distal (>10kb) Multiome | 321 | |
| chr5:34,547,973–34,548,826 | 108.1 kb | Distal (>10kb) Multiome | 73 | |
| chr5:34,655,099–34,655,230 | 1.1 kb | Proximal (<10kb) | 14 | |
| chr5:34,655,322–34,657,880 | 18 bp | At TSS Multiome | 808 | |
| chr5:34,838,509–34,839,735 | 182.9 kb | Distal (>10kb) Multiome | 893 | |
| chr5:34,914,780–34,916,174 | 259.2 kb | Distal (>10kb) Multiome | 956 | |
| chr5:34,929,003–34,930,376 | 273.2 kb | Distal (>10kb) Multiome | 783 |
Genomic view of the RAI14 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.