chr5 : 3,590,352 3,590,750
398 bp 56 TFs 2 linked genes
This 398 bp open chromatin element is linked to IRX1 and ENSG00000259603 and is bound by 56 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
IRX1 5.1 kb Proximal Proximity
ENSG00000259603 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:3,585,352 – 3,595,750
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 398 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 398 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 248 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 274 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 64 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 347 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 102 bp overlap
CLOCK 1 dataset
ChIP BA40_3 GSE96659.CLOCK.BA40_3 288 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 360 bp overlap
CTCF 11 datasets
ChIP C4-2B ENCFF821XVN 157 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 394 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 320 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 206 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 111 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 151 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 69 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 362 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 162 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 388 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 128 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 365 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 364 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 316 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 214 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 292 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 247 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 187 bp overlap
EZH2 27 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 398 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 369 bp overlap
ChIP GM23338 ENCFF613YON 398 bp overlap
ChIP GM23338 ENCFF886DXX 58 bp overlap
ChIP GM23338 ENCFF886DXX 299 bp overlap
ChIP H1 ENCFF232NZA 398 bp overlap
ChIP H1 ENCFF232NZA 398 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 350 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 324 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 147 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 391 bp overlap
ChIP SK-N-MC ENCFF434OHW 207 bp overlap
ChIP SK-N-MC ENCFF674XUJ 207 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 398 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 290 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 156 bp overlap
ChIP astrocyte ENCFF365JTP 327 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 250 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 398 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 213 bp overlap
ChIP hESC GSE113817.EZH2.hESC 376 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 143 bp overlap
ChIP hepatocyte ENCFF118DKH 103 bp overlap
ChIP hepatocyte ENCFF552DZB 398 bp overlap
ChIP neural progenitor cell ENCFF018MKA 398 bp overlap
ChIP neural progenitor cell ENCFF472NFV 398 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 304 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 242 bp overlap
FOXA1 3 datasets
ChIP ZR751 GSE72249.FOXA1.ZR751 84 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 65 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 119 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 229 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 333 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 254 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 299 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 281 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 398 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 303 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 336 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 306 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 204 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 174 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 398 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 244 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 354 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 370 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 378 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 398 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 129 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 382 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 398 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 398 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 113 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 398 bp overlap
ChIP neural cell ENCFF564MOT 223 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 193 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 337 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 398 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 306 bp overlap
ChIP H1 ENCFF239FFS 224 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 64 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 398 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 152 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 398 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 168 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 131 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 184 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 379 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 169 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 397 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 398 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 392 bp overlap
SS18 4 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 155 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 151 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 268 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 53 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 316 bp overlap
SUZ12 9 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 101 bp overlap
ChIP H1 ENCFF881NFR 398 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 144 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 319 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 398 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 398 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 398 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 337 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 302 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 136 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 344 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 398 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 353 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 265 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 309 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 398 bp overlap