chr5 : 1,877,802 – 1,878,575
773 bp 71 TFs 3 linked genes
This 773 bp open chromatin element is linked to IRX4, IRX4-AS1, and CTD-2194D22.4 and is bound by 71 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
IRX4 4.2 kb Proximal Proximity
IRX4-AS1 4.7 kb Proximal Proximity
CTD-2194D22.4 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:1,872,802 – 1,883,575
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 241 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 241 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 314 bp overlap
ARID1A 1 dataset
ChIP H9 GSE139260.ARID1A.H9 266 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 106 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 432 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 415 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 773 bp overlap
BRD4 9 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 205 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 263 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 773 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 574 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 566 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 277 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 681 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 373 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 308 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 167 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 153 bp overlap
ChIP H1 ENCFF095JHA 355 bp overlap
CDK9 2 datasets
ChIP HCT-116 GSE72622.CDK9.HCT-116 212 bp overlap
ChIP HCT-116 GSE72622.CDK9.HCT-116 239 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 512 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 210 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 438 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 623 bp overlap
CTCF 3 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 261 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 386 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 170 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 264 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 221 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 146 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 92 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 496 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 584 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 492 bp overlap
ChIP MDA-MB-134-VI GSE109103.ESR1.MDA-MB-134-VI 197 bp overlap
EZH2 27 datasets
ChIP A673 ENCFF790MVL 118 bp overlap
ChIP A673 ENCFF790MVL 178 bp overlap
ChIP A673 ENCFF955JRZ 149 bp overlap
ChIP GM23248 ENCFF404ZHM 156 bp overlap
ChIP GM23338 ENCFF613YON 773 bp overlap
ChIP GM23338 ENCFF886DXX 773 bp overlap
ChIP H1 ENCFF232NZA 773 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 773 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 147 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 473 bp overlap
ChIP astrocyte ENCFF365JTP 666 bp overlap
ChIP astrocyte ENCFF365JTP 264 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 773 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 468 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 306 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 306 bp overlap
ChIP fibroblast of lung ENCFF479BAW 216 bp overlap
ChIP fibroblast of lung ENCFF479BAW 161 bp overlap
ChIP hESC GSE113817.EZH2.hESC 773 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 286 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 201 bp overlap
ChIP hepatocyte ENCFF552DZB 773 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 773 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 773 bp overlap
ChIP neural progenitor cell ENCFF472NFV 773 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 312 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 112 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 402 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 52 bp overlap
GABPA 3 datasets
ChIP H1 ENCFF739QFD 166 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 195 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 463 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 773 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 254 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 436 bp overlap
HIF1A 2 datasets
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 331 bp overlap
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 290 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 595 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 429 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 95 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 278 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 467 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 410 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 366 bp overlap
ChIP MCF-7_BD610326 GSE128445.JUN.MCF-7_BD610326 271 bp overlap
KAT7 1 dataset
ChIP WTC11 ENCFF581TPB 365 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 419 bp overlap
ChIP H1 ENCFF078LED 629 bp overlap
MBD2 2 datasets
ChIP HeLa GSE41006.MBD2.HeLa 116 bp overlap
ChIP HeLa GSE41006.MBD2.HeLa 106 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 290 bp overlap
MYOCD 2 datasets
ChIP A-549 GSE128921.MYOCD.A-549 283 bp overlap
ChIP A-549 GSE128921.MYOCD.A-549 151 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 122 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 276 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 272 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 150 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 773 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 773 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 80 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 773 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 430 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 176 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 67 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 773 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 773 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 271 bp overlap
RELA 1 dataset
ChIP HDF_DMSO GSE77225.RELA.HDF_DMSO 90 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 773 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 100 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 378 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 62 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 342 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 544 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 650 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 208 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 284 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 710 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 169 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 390 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 773 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 773 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 773 bp overlap
ChIP NCI-H1703 GSE121755.SMARCA4.NCI-H1703 289 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 345 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 591 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 773 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 773 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 317 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 427 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 513 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 204 bp overlap
SUZ12 8 datasets
ChIP GM12878 ENCFF498QAM 371 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 252 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 104 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 773 bp overlap
ChIP NT2/D1 ENCFF574SXS 676 bp overlap
ChIP NT2/D1 ENCFF574SXS 601 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 672 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 86 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 120 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 86 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 386 bp overlap
TP63 3 datasets
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 57 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 224 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 124 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 545 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 706 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 221 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 710 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 117 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 209 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 384 bp overlap
ZNF2 1 dataset
ChIP HEK293T GSE78099.ZNF2.HEK293T 127 bp overlap
ZNF30 1 dataset
ChIP HEK293T GSE78099.ZNF30.HEK293T 318 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 52 bp overlap
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