chr4 : 107,685,576 – 107,686,261
685 bp 91 TFs 0 linked genes
This 685 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:107,680,576 – 107,691,261
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
AR 6 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 337 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 244 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 357 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 251 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 254 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 370 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 130 bp overlap
Atf3 3 datasets
Motif DE_36h DE_36h-Atf3_MA1988.2 7 bp overlap
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
Motif DE_72h DE_72h-Atf3_MA1988.2 7 bp overlap
BACH1 3 datasets
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BACH2 3 datasets
Motif DE_36h DE_36h-BACH2_MA1101.3 11 bp overlap
Motif DE_60h DE_60h-BACH2_MA1101.3 11 bp overlap
Motif DE_72h DE_72h-BACH2_MA1101.3 11 bp overlap
BATF 3 datasets
Motif DE_36h DE_36h-BATF_MA1634.2 7 bp overlap
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
Motif DE_72h DE_72h-BATF_MA1634.2 7 bp overlap
BATF3 3 datasets
Motif DE_36h DE_36h-BATF3_MA0835.3 7 bp overlap
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
Motif DE_72h DE_72h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 3 datasets
Motif DE_36h DE_36h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_72h DE_72h-BATFJUN_MA0462.3 7 bp overlap
BNC2 3 datasets
Motif DE_36h DE_36h-BNC2_MA1928.2 7 bp overlap
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
Motif DE_72h DE_72h-BNC2_MA1928.2 7 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 201 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 424 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 258 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 483 bp overlap
FOS 3 datasets
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
Motif DE_72h DE_72h-FOS_MA0476.2 8 bp overlap
FOS::JUN 3 datasets
Motif DE_36h DE_36h-FOSJUN_MA0099.4 9 bp overlap
Motif DE_60h DE_60h-FOSJUN_MA0099.4 9 bp overlap
Motif DE_72h DE_72h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUNB 3 datasets
Motif DE_36h DE_36h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_72h DE_72h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 3 datasets
Motif DE_36h DE_36h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_72h DE_72h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 3 datasets
Motif DE_36h DE_36h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_72h DE_72h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 5 datasets
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap
Motif DE_72h DE_72h-FOSL1_MA0477.3 9 bp overlap
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 189 bp overlap
ChIP HCT116 ENCFF540ZXN 397 bp overlap
FOSL1::JUN 3 datasets
Motif DE_36h DE_36h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_72h DE_72h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 3 datasets
Motif DE_36h DE_36h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_72h DE_72h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 3 datasets
Motif DE_36h DE_36h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_72h DE_72h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 3 datasets
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOSL2::JUN 3 datasets
Motif DE_36h DE_36h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 3 datasets
Motif DE_36h DE_36h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 3 datasets
Motif DE_36h DE_36h-FOSL2JUND_MA1144.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUND_MA1144.2 9 bp overlap
Motif DE_72h DE_72h-FOSL2JUND_MA1144.2 9 bp overlap
FOXA1 2 datasets
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 236 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 174 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 609 bp overlap
ChIP DE DE-FOXA2-2 578 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 244 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
Foxq1 1 dataset
Motif DE_72h DE_72h-Foxq1_MA0040.2 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 517 bp overlap
ChIP DE DE-GATA4-2 645 bp overlap
ChIP foregut GSE117136.GATA4.foregut 513 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 504 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 527 bp overlap
ChIP DE DE-GATA6-2 685 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 348 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 300 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 488 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 314 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 323 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 443 bp overlap
ChIP foregut GSE117136.GATA6.foregut 487 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 301 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 375 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 231 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 337 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 197 bp overlap
HOXB13 1 dataset
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 239 bp overlap
JDP2 3 datasets
Motif DE_36h DE_36h-JDP2_MA0655.1 9 bp overlap
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 418 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 512 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 364 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 469 bp overlap
JUN::JUNB 3 datasets
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_72h DE_72h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 3 datasets
Motif DE_36h DE_36h-JUNB_MA0490.3 9 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
Motif DE_72h DE_72h-JUNB_MA0490.3 9 bp overlap
JUND 7 datasets
Motif DE_36h DE_36h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 203 bp overlap
ChIP HCT116 ENCFF748ZQX 397 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 149 bp overlap
Jun 3 datasets
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 301 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 334 bp overlap
MEIS1 3 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NANOG 3 datasets
ChIP WA09 GSE105028.NANOG.WA09 227 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 487 bp overlap
ChIP hESC GSE18292.NANOG.hESC 263 bp overlap
NFE2 3 datasets
Motif DE_36h DE_36h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 223 bp overlap
NR1D1 1 dataset
Motif DE_72h DE_72h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_72h DE_72h-NR1D2_MA1532.2 15 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 592 bp overlap
PAX6 1 dataset
Motif DE_72h DE_72h-PAX6_MA0069.1 14 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 124 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
RBPJ 4 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RELA 2 datasets
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 239 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 206 bp overlap
SIX1 4 datasets
Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 457 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 390 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 560 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 469 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 314 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 199 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 467 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 260 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 241 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
SOX2 4 datasets
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
ChIP HCC2814 GSE137459.SOX2.HCC2814 278 bp overlap
ChIP HCC95 GSE137459.SOX2.HCC95 369 bp overlap
ChIP TT GSE46837.SOX2.TT 300 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 182 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 522 bp overlap
STAT1 4 datasets
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
Motif DE_72h DE_72h-STAT1_MA0137.4 9 bp overlap
STAT3 4 datasets
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Motif DE_72h DE_72h-STAT3_MA0144.3 9 bp overlap
Six4 4 datasets
Motif DE_36h DE_36h-Six4_MA2001.2 7 bp overlap
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
Motif DE_72h DE_72h-Six4_MA2001.2 7 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Stat4 4 datasets
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap
Motif DE_72h DE_72h-Stat4_MA0518.2 10 bp overlap
Stat5b 4 datasets
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap
TCF7L1 4 datasets
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 245 bp overlap
TEAD2 4 datasets
Motif DE_36h DE_36h-TEAD2_MA1121.2 7 bp overlap
Motif DE_48h DE_48h-TEAD2_MA1121.2 7 bp overlap
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD4 4 datasets
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TP63 1 dataset
ChIP BxPC-3 GSE115461.TP63.BxPC-3 351 bp overlap
ZBTB24 1 dataset
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 73 bp overlap
Zfp809 4 datasets
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 4 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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