chr4 : 42,501,690 42,501,986
296 bp 90 TFs 0 linked genes
This 296 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:42,496,690 – 42,506,986
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 215 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 184 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 58 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 274 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 177 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 296 bp overlap
ChIP neural cell ENCFF442QNK 296 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 296 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 296 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 250 bp overlap
FLI1 5 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 296 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 296 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 228 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 296 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 296 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 296 bp overlap
ChIP DE DE-FOXA2-2 296 bp overlap
Foxq1 3 datasets
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 296 bp overlap
ChIP DE DE-GATA4-2 296 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 296 bp overlap
ChIP DE DE-GATA6-2 296 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 134 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 242 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 296 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 240 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 154 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 220 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 296 bp overlap
Hmx3 3 datasets
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 161 bp overlap
ISL2 3 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 296 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 296 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 292 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 262 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 219 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 296 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 198 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 296 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 296 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 296 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 290 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 256 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 296 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 213 bp overlap
ChIP hESC GSE18292.NANOG.hESC 263 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 220 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 105 bp overlap
NKX2-3 3 datasets
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 3 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 296 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nkx3-1 3 datasets
Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 3 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
Nr2e1 3 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX4 1 dataset
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 296 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 220 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 240 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 262 bp overlap
REST 3 datasets
ChIP PFSK-1 ENCFF845VHA 268 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 125 bp overlap
ChIP neural ENCSR000BTV.REST.neural 282 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 208 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 178 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD2 4 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 296 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 296 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 296 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 296 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 244 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 258 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 230 bp overlap
SMARCA4 10 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 204 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 296 bp overlap
ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 246 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 183 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 248 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 296 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 296 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 272 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 296 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 241 bp overlap
SMARCC1 9 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 296 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 74 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 265 bp overlap
ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 151 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 296 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 296 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 296 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 296 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 271 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 296 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 296 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 198 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 182 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 182 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 152 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 191 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 296 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 102 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 295 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 238 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap