chr4 : 24,795,971 24,796,380
409 bp 72 TFs 1 linked gene
This 409 bp open chromatin element is linked to SOD3 and is bound by 72 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SOD3 399 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:24,790,971 – 24,801,380
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AR 3 datasets
ChIP DU145 GSE47987.AR.DU145 201 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 159 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 61 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 335 bp overlap
ChIP K562 ENCFF938UXQ 285 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 227 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 162 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 130 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 231 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 184 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 50 bp overlap
BRD4 2 datasets
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 233 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 257 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 288 bp overlap
ChIP K562 ENCFF963TXY 182 bp overlap
CBFA2T3 3 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 294 bp overlap
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 344 bp overlap
ChIP K562 ENCFF673OEZ 298 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 197 bp overlap
ChIP K562 ENCFF199GSZ 407 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 154 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 150 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 186 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 355 bp overlap
ChIP K562 ENCFF403WPG 237 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 275 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 409 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 298 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 308 bp overlap
ChIP K562 ENCFF226VMS 317 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 270 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 109 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 291 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 152 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 344 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 220 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 259 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 293 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 266 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 138 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP K562 ENCFF830LLA 409 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 409 bp overlap
ChIP DE DE-GATA4-2 409 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 409 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 409 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 409 bp overlap
ChIP DE DE-GATA6-2 409 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 315 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 409 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 297 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 359 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 409 bp overlap
ChIP foregut GSE117136.GATA6.foregut 409 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 403 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 383 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 251 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 251 bp overlap
ChIP PC-3 GSE147455.HDAC1.PC-3 73 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 326 bp overlap
ChIP K562 ENCFF744ALD 405 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 283 bp overlap
Hand1 1 dataset
Motif DE_72h DE_72h-Hand1_MA2123.1 9 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 340 bp overlap
ChIP K562 ENCFF348IBL 228 bp overlap
ChIP K562 ENCFF771OHZ 175 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 142 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 245 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 163 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 353 bp overlap
MBD2 1 dataset
ChIP K-562 ENCSR221GAN.MBD2.K-562 119 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 311 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 174 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 257 bp overlap
ChIP K562 ENCFF788MPU 367 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 192 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 134 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 191 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 227 bp overlap
NR3C1 2 datasets
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 84 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 52 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 203 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 121 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 115 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 330 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 155 bp overlap
POLR2A 2 datasets
ChIP sigmoid colon ENCFF653CQA 57 bp overlap
ChIP upper lobe of left lung ENCFF504HCM 95 bp overlap
PRDM1 2 datasets
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 264 bp overlap
Rhox11 1 dataset
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 409 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 409 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 247 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 219 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
TAL1 11 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 328 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 319 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 237 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 204 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 209 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 233 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 278 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 214 bp overlap
ChIP K562 ENCFF620GMX 179 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 295 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 120 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 263 bp overlap
ChIP K562 ENCFF931DJY 390 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 309 bp overlap
ChIP K562 ENCFF319QZT 370 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 362 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 135 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 147 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF263 3 datasets
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 317 bp overlap
ChIP K562 ENCFF640RNA 409 bp overlap
ZNF530 1 dataset
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF768 2 datasets
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap