chr4 : 13,535,571 13,536,360
789 bp 70 TFs 2 linked genes
This 789 bp open chromatin element is linked to LINC01097 and NKX3-2 and is bound by 70 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC01097 4.2 kb Proximal Proximity
NKX3-2 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,530,571 – 13,541,360
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 325 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 693 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 596 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 635 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 789 bp overlap
BRD4 2 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 50 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 419 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 451 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 474 bp overlap
ChIP H1 ENCFF095JHA 577 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 269 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 615 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 212 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 306 bp overlap
CTCF 23 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 464 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 157 bp overlap
ChIP H9 ENCFF152GTF 354 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 214 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 150 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 208 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 385 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 259 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 309 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 297 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 206 bp overlap
ChIP endodermal cell ENCFF471YCZ 226 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 607 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 264 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 627 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 203 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 491 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 277 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 179 bp overlap
EP300 1 dataset
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 235 bp overlap
ESR1 2 datasets
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 270 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 257 bp overlap
EZH1 1 dataset
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 224 bp overlap
EZH2 38 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 304 bp overlap
ChIP GM23338 ENCFF613YON 789 bp overlap
ChIP GM23338 ENCFF886DXX 732 bp overlap
ChIP H1 ENCFF232NZA 789 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 789 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 689 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 726 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 245 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 389 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 244 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 789 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 327 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 420 bp overlap
ChIP T98G GSE112240.EZH2.T98G 242 bp overlap
ChIP astrocyte ENCFF365JTP 480 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 563 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 789 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 789 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 775 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP fibroblast of lung ENCFF479BAW 389 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 789 bp overlap
ChIP hESC GSE113817.EZH2.hESC 475 bp overlap
ChIP hESC GSE13084.EZH2.hESC 280 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 270 bp overlap
ChIP hepatocyte ENCFF552DZB 714 bp overlap
ChIP hepatocyte ENCFF552DZB 257 bp overlap
ChIP keratinocyte ENCFF070STK 294 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 334 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 320 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 229 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 360 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 789 bp overlap
ChIP neural progenitor cell ENCFF472NFV 789 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 299 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 196 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 584 bp overlap
HNRNPLL 6 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 474 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 474 bp overlap
ChIP HepG2 ENCFF355PIC 601 bp overlap
ChIP HepG2 ENCFF952XAB 601 bp overlap
ChIP HepG2 ENCFF952XAB 386 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 201 bp overlap
INO80 2 datasets
ChIP Huh-7 GSE97411.INO80.Huh-7 84 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 527 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 264 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 425 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 159 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 170 bp overlap
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 202 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 228 bp overlap
MAF1 1 dataset
ChIP THP-1_monocytes GSE96800.MAF1.THP-1_monocytes 153 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 446 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 398 bp overlap
MLLT3 1 dataset
ChIP HSPC_MLLT3-virus GSE111482.MLLT3.HSPC_MLLT3-virus 297 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR914NEI.MTA3.K-562 224 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 239 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 343 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 333 bp overlap
Nrf1 1 dataset
Motif DE_12h DE_12h-Nrf1_MA0506.3 12 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 332 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 309 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 195 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 761 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 671 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 245 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 602 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 282 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 273 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 245 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 245 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 789 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 108 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 209 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 749 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 414 bp overlap
STAG2 1 dataset
ChIP HL-60 GSE131577.STAG2.HL-60 121 bp overlap
STAT5B 1 dataset
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 118 bp overlap
SUZ12 10 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 245 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 476 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 253 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 789 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 144 bp overlap
ChIP K562 ENCFF397TBJ 245 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 113 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 285 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 628 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 246 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 177 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 302 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 220 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 331 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 524 bp overlap