chr3 : 173,354,122 – 173,354,705

583 bp 89 TFs 0 linked genes

This 583 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

89 transcription factors

Ahr::Arnt 1 dataset

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

BRD2 2 datasets

ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 298 bp overlap

ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 292 bp overlap

BRD4 3 datasets

ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 214 bp overlap

ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 173 bp overlap

ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 325 bp overlap

CEBPA 10 datasets

ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 151 bp overlap

ChIP MV4-11 GSE88746.CEBPA.MV4-11 215 bp overlap

ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 224 bp overlap

ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 202 bp overlap

ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 328 bp overlap

ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 370 bp overlap

ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 355 bp overlap

ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 450 bp overlap

ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 452 bp overlap

ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 285 bp overlap

CEBPB 6 datasets

ChIP H1 ENCFF871PTR 261 bp overlap

ChIP MV4-11 GSE88746.CEBPB.MV4-11 431 bp overlap

ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 275 bp overlap

ChIP WA01 ENCSR000EBV.CEBPB.WA01 164 bp overlap

ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 239 bp overlap

ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 320 bp overlap

CTCF 2 datasets

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

ChIP U-937 ERP008568.CTCF.U-937 180 bp overlap

Cebpa 4 datasets

ChIP BLaER1 ENCFF346MCV 329 bp overlap

ChIP BLaER1 ENCFF364PUR 251 bp overlap

ChIP BLaER1 ENCFF460KDD 399 bp overlap

ChIP BLaER1 ENCFF680YXW 394 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 201 bp overlap

EP300 1 dataset

ChIP AML GSE131939.EP300.AML 123 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::SREBF2 1 dataset

Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap

ESR1 1 dataset

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 6 datasets

Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap

ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 116 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 156 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 202 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 358 bp overlap

ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 131 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 583 bp overlap

ChIP DE DE-FOXA2-2 542 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap

FOXD1 1 dataset

Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXI1 1 dataset

Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP1 1 dataset

Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

FOXP4 1 dataset

Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

GCM2 1 dataset

Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap

HSF1 2 datasets

ChIP MO91_27A_20UM GSE45852.HSF1.MO91_27A_20UM 175 bp overlap

ChIP MO91_CHX_10UM GSE45852.HSF1.MO91_CHX_10UM 236 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IRF2 1 dataset

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

JMJD1C 1 dataset

ChIP THP-1 GSE63484.JMJD1C.THP-1 205 bp overlap

MED 1 dataset

ChIP SEM GSE83671.MED.SEM 323 bp overlap

MEF2A 1 dataset

Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MEF2C 1 dataset

Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

MITF 5 datasets

ChIP 501-mel GSE137522.MITF.501-mel 399 bp overlap

ChIP 501-mel GSE61965.MITF.501-mel 243 bp overlap

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 366 bp overlap

ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 369 bp overlap

Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap

MXI1 2 datasets

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYB 1 dataset

ChIP DU528 GSE94000.MYB.DU528 251 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 360 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 304 bp overlap

NCOA2 1 dataset

ChIP MCF-7 ERP000901.NCOA2.MCF-7 271 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

NR1I3 1 dataset

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

NRIP1 1 dataset

ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 229 bp overlap

Nkx3-1 1 dataset

Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 269 bp overlap

Prdm5 1 dataset

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

RARA 1 dataset

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

RARA::RXRA 1 dataset

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 1 dataset

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

RORB 1 dataset

Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap

RORC 1 dataset

Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

Runx1 1 dataset

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 246 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 256 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 205 bp overlap

SPI1 1 dataset

ChIP THP-1 GSE128834.SPI1.THP-1 90 bp overlap

SREBF1 1 dataset

Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap

SREBF2 1 dataset

Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap

STAT1 1 dataset

ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 138 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 175 bp overlap

TFE3 1 dataset

Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap

TFEB 1 dataset

Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap

USF1 3 datasets

Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap

ChIP H1 ENCFF090WVU 241 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 234 bp overlap

USF2 2 datasets

Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap

ChIP WTC11 ENCFF139JAW 417 bp overlap

Wt1 1 dataset

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZNF213 1 dataset

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF24 1 dataset

Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap