chr3 : 148,475,019 148,475,637
618 bp 119 TFs 0 linked genes
This 618 bp open chromatin element has no linked target genes and is bound by 119 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:148,470,019 – 148,480,637
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
Arid3a 4 datasets
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
BARHL1 1 dataset
Motif DE_36h DE_36h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_36h DE_36h-BARHL2_MA0635.2 6 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CDX1 1 dataset
Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 220 bp overlap
Crx 3 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DUX4 3 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
Dmbx1 3 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Dmrt1 2 datasets
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
Dux 3 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 412 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 120 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 216 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 145 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 365 bp overlap
ChIP DE DE-FOXA2-2 410 bp overlap
FOXD3 2 datasets
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
Foxq1 2 datasets
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA2 3 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 290 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 275 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 503 bp overlap
ChIP DE DE-GATA4-2 514 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 425 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 290 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 306 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 480 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 598 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 566 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 537 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 466 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 618 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 600 bp overlap
ChIP foregut GSE117136.GATA6.foregut 512 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 308 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 320 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
GSC 3 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA10 1 dataset
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
HOXA6 1 dataset
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
HOXC12 1 dataset
Motif DE_36h DE_36h-HOXC12_MA0906.2 10 bp overlap
HOXD8 1 dataset
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
IKZF1 1 dataset
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Lhx3 4 datasets
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
MZF1 3 datasets
Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NR1D2 1 dataset
Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap
NR2C1 1 dataset
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NR2F6 1 dataset
Motif DE_36h DE_36h-NR2F6_MA1539.1 15 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
OTX1 3 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
PITX1 3 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 3 datasets
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 3 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm14 1 dataset
Motif DE_36h DE_36h-Prdm14_MA1998.2 8 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 122 bp overlap
RHOXF1 3 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RORA 1 dataset
Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 385 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 361 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 356 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 299 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SOX10 2 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX13 1 dataset
Motif DE_36h DE_36h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 253 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 260 bp overlap
SOX2 1 dataset
Motif DE_36h DE_36h-SOX2_MA0143.5 7 bp overlap
Sox1 3 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Sox11 2 datasets
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_36h DE_36h-Sox3_MA0514.3 7 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 229 bp overlap
TCF7L1 1 dataset
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
TFAP2A 1 dataset
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
TFAP4 1 dataset
Motif DE_36h DE_36h-TFAP4_MA1570.1 10 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
USF1 1 dataset
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 437 bp overlap
ZFP42 3 datasets
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
ZNF16 3 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF418 1 dataset
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
ZNF558 1 dataset
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
ZNF701 1 dataset
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZSCAN16 1 dataset
Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap